v2.6.0 - Major Release

CHANGES IN VERSION 2.6.0

NEW FEATURES

o Allele specific version of HiC-Pro

o New utility to build the VCF file for allele specific analysis

o New manual version

o Manual is now online at http://nservant.github.io/HiC-Pro/

SIGNIFICANT USER-VISIBLE CHANGES

o New configuration file with ALLELE_SPECIFIC_SNP field. If specified HiC-Pro is run in allele specific mode.

o Improve stepwise analysis. Check input files according to the specified step

o The split_reads.py utility can now handle fastq.gz files

BUG FIXES

o Fix bug in MAX_INSERT_SIZE

o Fix bug in build_raw_maps.sh in --chrsize (reported by D. Robelin)

o Fix bugs in CIS short/long ranges interaction reporting

o Fix bugs in bowtie pairing - option -m and -s

o Fix bug in mapped_2hic_fragments when singleton are not removed during the pairing