fix bug in insert size

nservant · Aug 7, 2015 · 8046447 · 8046447
1 parent dc59f06
commit 8046447
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/NEWS b/NEWS
@@ -21,6 +21,8 @@ SIGNIFICANT USER-VISIBLE CHANGES
 
 BUG FIXES
 
+   o Fix bug in MAX_INSERT_SIZE
+
    o Fix bug in build_raw_maps.sh in --chrsize (reported by D. Robelin)
 
    o Fix bugs in CIS short/long ranges interaction reporting

diff --git a/scripts/mapped_2hic_fragments.sh b/scripts/mapped_2hic_fragments.sh
@@ -22,7 +22,7 @@ opts="-v"
 if [[ "${GET_ALL_INTERACTION_CLASSES}" -eq "1" ]]; then opts=$opts" -a"; fi
 if [[ "${GET_PROCESS_SAM}" -eq "1" ]]; then opts=$opts" -S"; fi
 if [[ "${MIN_INSERT_SIZE}" -ge "0" && "${MIN_INSERT_SIZE}" -ne "" ]]; then opts=$opts" -s ${MIN_INSERT_SIZE}"; fi
-if [[ "${MAX_INSERT_SIZE}" -ge "0" && "${MIN_INSERT_SIZE}" -ne "" ]]; then opts=$opts" -l ${MAX_INSERT_SIZE}"; fi
+if [[ "${MAX_INSERT_SIZE}" -ge "0" && "${MAX_INSERT_SIZE}" -ne "" ]]; then opts=$opts" -l ${MAX_INSERT_SIZE}"; fi
 if [[ ! -z ${ALLELE_SPECIFIC_SNP} ]]; then opts=$opts" -g XA"; fi
 
 GENOME_FRAGMENT_FILE=`abspath $GENOME_FRAGMENT`