About/Citing

This is an interactive Shiny-based app that visualises the analysed data for BARSEQ screens as described in XXX et al. DOI: todo

Generated by the Bushell lab at Umeå University. http://www.bushelllab.com/

License

MIT license

Files

• count_barseq.R -- takes all FASTQ files and outputs count matrices
• grstats.R -- takes count files and generates statistics
• barseq_paper_plots.R -- generates plots for the paper
• barseq_pools/* -- processed count files and metadata TODO to zenodo instead?

These are related to the shiny app:

• global.R -- Load files into memory
• server.R -- Server backend
• start.R -- For starting the server
• Makefile -- For starting the server
• ui.R -- User interface declaration