This is an interactive Shiny-based app that visualises the analysed data for BARSEQ screens as described in XXX et al. DOI: todo
Generated by the Bushell lab at Umeå University. http://www.bushelllab.com/
MIT license
- count_barseq.R -- takes all FASTQ files and outputs count matrices
- grstats.R -- takes count files and generates statistics
- barseq_paper_plots.R -- generates plots for the paper
- barseq_pools/* -- processed count files and metadata TODO to zenodo instead?
These are related to the shiny app:
- global.R -- Load files into memory
- server.R -- Server backend
- start.R -- For starting the server
- Makefile -- For starting the server
- ui.R -- User interface declaration