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fls-bioinformatics-core / genomics Public

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Refactor SOLiD code into new module under 'platforms'#221

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pjbriggs wants to merge 12 commits intodevelfls-bioinformatics-core/genomics:develfrom refactor-solid-codefls-bioinformatics-core/genomics:refactor-solid-codeCopy head branch name to clipboard

+3,654-1,587

Conversation Commits12 (12)Checks Files changed

Commits

Commits on Dec 5, 2024

bcftbx: new module 'platforms.solid.data' replicates code in 'SolidData' module.
pjbriggs
committed
bcftbx.platforms.solid.data: add support for overriding default classes.
pjbriggs
committed
bcftbx: change camel-case method names to underscore-separated in platforms.solid.data.
pjbriggs
committed
bcftbx: reimplement 'SolidData' module as wrappers for 'platforms.solid.data'.
pjbriggs
committed
bcftbx: fix bug in platforms.solid.data (hadn't changed name for 'RunInfo' class in 'list_run_directories').
pjbriggs
committed

Commits on Dec 6, 2024

bcftbx: update !# string in 'platforms.solid.data'.
pjbriggs
committed
bcftbx: change how wrappers are implemented in 'SolidData' module.
pjbriggs
committed
bcftbx: rename 'Run' class to 'RunDir' in platforms.solid.data.
pjbriggs
committed
bcftbx: cosmetic formatting tidy in 'SolidData' module.
pjbriggs
committed
bcftbx: new module 'platforms.solid.experiment' reimplements functionality of 'Experiment'.
pjbriggs
committed
bcftbx: refactor 'Experiment' module to use code from 'platforms.solid.experiment'.
pjbriggs
committed
bcftbx.platforms.solid.data: cosmetic updates to some test docstrings.
pjbriggs
committed

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