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Scheduled monthly dependency update for February #406

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Scheduled monthly dependency update for February #406

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76b3faf
Pin pomegranate to latest version 1.0.3
pyup-bot Feb 1, 2024
7982c18
Update cython from 0.29.34 to 3.0.8
pyup-bot Feb 1, 2024
827d5b4
Update numpy from 1.24.3 to 1.26.3
pyup-bot Feb 1, 2024
97025c7
Update dask from 2023.4.1 to 2024.1.1
pyup-bot Feb 1, 2024
b4b2166
Update scipy from 1.10.1 to 1.12.0
pyup-bot Feb 1, 2024
fe880de
Update matplotlib from 3.7.1 to 3.8.2
pyup-bot Feb 1, 2024
15163cb
Update seaborn from 0.12.2 to 0.13.2
pyup-bot Feb 1, 2024
0e75ea9
Update pandas from 2.0.1 to 2.2.0
pyup-bot Feb 1, 2024
3187c59
Update scikit-learn from 1.2.2 to 1.4.0
pyup-bot Feb 1, 2024
7f4ade4
Update h5py from 3.8.0 to 3.10.0
pyup-bot Feb 1, 2024
bc3452c
Update numexpr from 2.8.4 to 2.9.0
pyup-bot Feb 1, 2024
a8a2858
Update zarr from 2.14.2 to 2.16.1
pyup-bot Feb 1, 2024
3d071b9
Update ipython from 8.13.0 to 8.21.0
pyup-bot Feb 1, 2024
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6 changes: 3 additions & 3 deletions requirements_dev_base.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# required
cython==0.29.34
numpy==1.24.3
dask[array]==2023.4.1
cython==3.0.8
numpy==1.26.3
dask[array]==2024.1.1
20 changes: 10 additions & 10 deletions requirements_dev_optional.txt
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
# optional
scipy==1.10.1
matplotlib==3.7.1
seaborn==0.12.2
pandas==2.0.1
scikit-learn==1.2.2
h5py==3.8.0
numexpr==2.8.4
zarr==2.14.2
scipy==1.12.0
matplotlib==3.8.2
seaborn==0.13.2
pandas==2.2.0
scikit-learn==1.4.0
h5py==3.10.0
numexpr==2.9.0
zarr==2.16.1
hmmlearn==0.3.0
pomegranate<1.0.0
pomegranate==1.0.3
pyfasta==0.5.2
ipython==8.13.0
ipython==8.21.0
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