Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Refactor slist and dlist according to NEURON #1110

Merged
merged 10 commits into from
Dec 7, 2023
Merged

Refactor slist and dlist according to NEURON #1110

Show file tree
Hide file tree
Changes from 2 commits
Commits
Show all changes
10 commits
Select commit Hold shift + click to select a range
33ceb30
Refactor printing slist/dlist in new function similarly to NEURON
iomaganaris Dec 4, 2023
4c0c64c
Fix tests
iomaganaris Dec 4, 2023
d3beee2
Merge remote-tracking branch 'origin/master' into magkanar/refactor_s…
iomaganaris Dec 5, 2023
4dc457b
Added test for initlists
iomaganaris Dec 5, 2023
3871183
Make format happy
iomaganaris Dec 5, 2023
05ea2e0
Removed check for second set up of the slist/dlist
iomaganaris Dec 6, 2023
a6acc3d
Addressed Luc's comments
iomaganaris Dec 7, 2023
c726805
Make format happy
iomaganaris Dec 7, 2023
eb74411
Try different syntax for [[maybe_unused]]
iomaganaris Dec 7, 2023
c735717
Fix it in both places
iomaganaris Dec 7, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
13 changes: 12 additions & 1 deletion src/codegen/codegen_neuron_cpp_visitor.cpp
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -286,6 +286,13 @@ void CodegenNeuronCppVisitor::print_neuron_includes() {


void CodegenNeuronCppVisitor::print_sdlists_init(bool print_initializers) {
iomaganaris marked this conversation as resolved.
Show resolved Hide resolved
printer->add_newline(2);
printer->add_line("static void _initlists() {");
printer->increase_indent();
printer->add_multi_line(R"CODE(
static int _first = 1;
if (!_first) return;
iomaganaris marked this conversation as resolved.
Show resolved Hide resolved
)CODE");
for (auto i = 0; i < info.prime_variables_by_order.size(); ++i) {
const auto& prime_var = info.prime_variables_by_order[i];
/// TODO: Something similar needs to happen for slist/dlist2 but I don't know their usage at
Expand Down Expand Up @@ -319,6 +326,9 @@ void CodegenNeuronCppVisitor::print_sdlists_init(bool print_initializers) {
position_of_float_var(prime_var_deriv_name));
}
}
printer->add_line("_first = 0;");
printer->decrease_indent();
printer->add_line("};");
}


Expand Down Expand Up @@ -389,7 +399,7 @@ void CodegenNeuronCppVisitor::print_mechanism_register() {
printer->add_newline(2);
printer->add_line("/** register channel with the simulator */");
printer->fmt_push_block("void _{}_reg()", info.mod_file);
print_sdlists_init(true);
printer->add_line("_initlists();");
// type related information
printer->add_newline();
printer->fmt_line("int mech_type = nrn_get_mechtype({}[1]);", get_channel_info_var_name());
Expand Down Expand Up @@ -659,6 +669,7 @@ void CodegenNeuronCppVisitor::print_codegen_routines() {
print_data_structures(true);
print_global_variables_for_hoc();
print_compute_functions(); // only nrn_cur and nrn_state
print_sdlists_init(true);
print_mechanism_register();
print_namespace_end();
codegen = false;
Expand Down
5 changes: 1 addition & 4 deletions test/unit/codegen/codegen_neuron_cpp_visitor.cpp
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -227,10 +227,7 @@ void _nrn_mechanism_register_data_fields(Args&&... args) {
THEN("Placeholder registration function is printed") {
std::string expected_placeholder_reg = R"(/** register channel with the simulator */
void __test_reg() {
/* s */
_slist1[0] = {4, 0};
/* Ds */
_dlist1[0] = {7, 0};
_initlists();
iomaganaris marked this conversation as resolved.
Show resolved Hide resolved

int mech_type = nrn_get_mechtype(mechanism_info[1]);
_nrn_mechanism_register_data_fields(mech_type,
Expand Down
Loading