update 1 file and copy 1 file: add aux training scripts

xing-lab-pitt · Mar 18, 2024 · 6b88cf9 · 6b88cf9
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diff --git a/notebooks/scripts/csn_scripts/train_data_real_v11_01_aux.sh b/notebooks/scripts/csn_scripts/train_data_real_v11_01_aux.sh
@@ -5,5 +5,5 @@
 # model 901
 # model 88 resume
 # model 75 aug
-model=v11_01_aux
+model=v11_01_aux-test
 nohup python ../livecellx/model_zoo/segmentation/train_csn.py --train_dir="./notebook_results/a549_ccp_vim/train_data_v11" --test_dir="./notebook_results/a549_ccp_vim/test_data_v11"  --source=all --model_version=version_$model --epochs=5000 --kernel_size=1 --batch_size=2 --batch_size=2 --degrees=30 --translation=0.3 --aug_scale="0.5,2" --input_type=raw_aug_duplicate --loss=BCE --ou_aux> train_out_model"$model"_resume.out 2>&1 &
diff --git a/notebooks/scripts/csn_scripts/train_data_real_v12_01_aux.sh b/notebooks/scripts/csn_scripts/train_data_real_v12_01_aux.sh
@@ -0,0 +1,9 @@
+############################################################################################################
+# syn underseg training 5300 series) with mild augmentation
+############################################################################################################
+
+# model 901
+# model 88 resume
+# model 75 aug
+model=v12_01_aux
+nohup python ../livecellx/model_zoo/segmentation/train_csn.py --train_dir="./notebook_results/a549_ccp_vim/train_data_v12" --test_dir="./notebook_results/a549_ccp_vim/test_data_v12"  --source=all --model_version=version_$model --epochs=5000 --kernel_size=1 --batch_size=2 --batch_size=6 --degrees=30 --translation=0.3 --aug_scale="0.5,2" --input_type=raw_aug_duplicate --loss=BCE --ou_aux> train_out_model"$model"_resume.out 2>&1 &