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Refactor RO Crate #47

Merged
merged 4 commits into from
Sep 11, 2024
Merged

Refactor RO Crate #47

merged 4 commits into from
Sep 11, 2024

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alexhambley
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@alexhambley alexhambley commented Sep 11, 2024

Addresses:
#36, #38, #39, #40

Highlights:
Adds source files, Dockerfile and poetry.lock to RO Crate
RO Crate now conforms to Workflow Run RO Crate
Tidied up and added newer diagram to readme

- Partially addresses #39
- Now adds source files, Dockerfile and poetry.lock
- References mainEntity
- Removed rocrate-zenodo from pip install as upload will be external to the workflow.
- Addresses #39
- RO crate now includes source files and better conforms to workflow run RO crate
- Includes mainEntity, conformsTo and references to source files
- Snakemake component now represented correctly
…un profile (#39)

- Addresses #39
- create_ro_crate.py refactored and updated to create crate that includes CreateAction with relevant metadata
- Metadata added to Dockerfile
- Example RO Crate Metadata updated to reflect this
- Addresses #40, #39, #38, #36
- Added newer diagram to readme.
- Removed references to ghcr, this will be added back later
- Added proper authors and orcids
- Replaced Dockerfile encodingFormat with text/plain
- Added created_files.json to RO Crate and added to data_entity["isBasedOn"].
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@OliverWoolland OliverWoolland left a comment

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Approving but I think it would be good to:

  • decide if example intermediate outputs should be included or their generation documented
  • decide if example outputs should be included in the versioning or as release artifacts
  • checks should be passing

@alexhambley alexhambley merged commit 71f1dca into develop Sep 11, 2024
1 of 3 checks passed
@alexhambley alexhambley deleted the refactor-ro-crate branch September 11, 2024 09:26
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2 participants