update salmon script

wistaria · Feb 15, 2024 · f4147cf · f4147cf
1 parent 3612d5c
commit f4147cf
Showing 1 changed file with 14 additions and 0 deletions.
diff --git a/apps/salmon/config/default/postprocess.sh b/apps/salmon/config/default/postprocess.sh
@@ -0,0 +1,14 @@
+set -u
+
+if [ -x $ISSP_UCOUNT ]; then
+  cd $PREFIX/bin
+  for file in salmon; do
+    mv ${file} ${file}_nocount
+    cat << EOF > ${file}
+#!/bin/sh
+${ISSP_UCOUNT} salmon
+${PREFIX}/bin/${file}_nocount \$@
+EOF
+    chmod +x ${file}
+  done
+fi