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Issues list

segment fault
#430 opened Jul 10, 2024 by lingc31415
Installation issues
#429 opened May 4, 2024 by TommyH-Tran
ZeroDivisionError: float division by zero question how can I do this? why does it do that? where can I get this? etc.
#428 opened May 2, 2024 by ivaneskos
Running --graphics after analysis
#427 opened Apr 19, 2024 by artfet
add pyani dnadiff subcommand enhancement something we'd like pyani to do that it doesn't already
#424 opened Mar 19, 2024 by kiepczi 0.3.1
Type strain vs X of genomes enhancement something we'd like pyani to do that it doesn't already question how can I do this? why does it do that? where can I get this? etc.
#417 opened Jun 7, 2023 by nikolomics
Untested code in fastani.py VERSION_3 issues relating to version 0.3.x of pyani
#405 opened Jun 29, 2022 by baileythegreen
2
1
test_cli_parsing() tests fail when pytest is run with no flags bug something isn't working how it should interface issues related to how the user tells pyani to do something tests issues relating to tests
#402 opened Jun 9, 2022 by baileythegreen 0.3.0
Rationalise documentation documentation documentation is unclear or incomplete
#392 opened Apr 27, 2022 by widdowquinn 0.3.0
Use alembic to manage SQLite schema changes? enhancement something we'd like pyani to do that it doesn't already
#378 opened Jan 28, 2022 by widdowquinn 0.3.0
Add tests for --recovery mode tests issues relating to tests
#362 opened Nov 30, 2021 by baileythegreen 0.3.1
Add a --dry-run flag, generally enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#343 opened Oct 1, 2021 by baileythegreen 0.3.1
Use --noextend in NUCmer as a rule bug something isn't working how it should method the issue relates to how results are calculated VERSION_3 issues relating to version 0.3.x of pyani
#342 opened Sep 30, 2021 by baileythegreen 0.3.0
NUCmer job generation for large jobs slows down rapidly. bug something isn't working how it should enhancement something we'd like pyani to do that it doesn't already
#306 opened Jul 7, 2021 by widdowquinn 0.3.1
Make version_0_2 the default branch and rename master to version_0_3 documentation documentation is unclear or incomplete VERSION_2 issues relating to version 0.2.x of pyani
#248 opened Apr 14, 2021 by widdowquinn 0.3.0
Missing labels and captions in plots with default settings documentation documentation is unclear or incomplete question how can I do this? why does it do that? where can I get this? etc. visualisation issues relating to plot outputs
#221 opened Aug 19, 2020 by peterjc 0.3.0
Add SLURM support enhancement something we'd like pyani to do that it doesn't already HIGH PRIORITY high priority issue interface issues related to how the user tells pyani to do something
#215 opened Aug 3, 2020 by widdowquinn 0.3.0
Adopt concurrent.futures in place of multiprocessing enhancement something we'd like pyani to do that it doesn't already performance the issue relates to making pyani more efficient
#194 opened Jun 6, 2020 by widdowquinn 0.3.0
Add label propagation classifier to pyani for taxon determination enhancement something we'd like pyani to do that it doesn't already method the issue relates to how results are calculated
#188 opened May 29, 2020 by widdowquinn 0.3.0
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