release: bump to version v0.8.3

wheretrue · Jan 26, 2024 · c5822d5 · c5822d5
1 parent 7d8349d
commit c5822d5
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Showing 18 changed files with 54 additions and 48 deletions.
diff --git a/.github/workflows/build-cli-image.yml b/.github/workflows/build-cli-image.yml
@@ -37,5 +37,5 @@ jobs:
           build-args: |
             CARGO_BUILD_PROFILE=release
           push: true
-          tags: public.ecr.aws/p3a4z1t3/exon-cli:latest,public.ecr.aws/p3a4z1t3/exon-cli:v0.8.2
+          tags: public.ecr.aws/p3a4z1t3/exon-cli:latest,public.ecr.aws/p3a4z1t3/exon-cli:v0.8.3
           platforms: linux/amd64,linux/arm64
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,11 @@
 # CHANGELOG
 
+## v0.8.3 (2024-01-26)
+
+### Fix
+
+- update BAM/SAM tests (#366)
+
 ## v0.8.2 (2024-01-25)
 
 ## v0.8.1 (2024-01-25)

diff --git a/Cargo.lock b/Cargo.lock
diff --git a/Cargo.toml b/Cargo.toml
@@ -4,7 +4,7 @@ homepage = "https://www.wheretrue.dev/docs/exon/"
 license = "Apache-2.0"
 readme = "README.md"
 repository = "https://github.com/wheretrue/exon"
-version = "0.8.2"
+version = "0.8.3"
 
 [workspace]
 members = [

diff --git a/cz.json b/cz.json
@@ -1,7 +1,7 @@
 {
   "commitizen": {
     "name": "cz_conventional_commits",
-    "version": "0.8.2",
+    "version": "0.8.3",
     "tag_format": "v$version",
     "version_files": [
       "Cargo.toml",

diff --git a/exon/exon-bam/Cargo.toml b/exon/exon-bam/Cargo.toml
@@ -12,7 +12,7 @@ version = {workspace = true}
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 itertools = "0.12.0"
 noodles = {workspace = true, features = ["core", "async", "bam", "sam", "bgzf"]}

diff --git a/exon/exon-bcf/Cargo.toml b/exon/exon-bcf/Cargo.toml
@@ -12,8 +12,8 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
-exon-vcf = {path = "../exon-vcf", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
+exon-vcf = {path = "../exon-vcf", version = "0.8.3"}
 futures = {workspace = true}
 noodles = {workspace = true, features = ["core", "async", "bcf", "bgzf"]}
 object_store = {workspace = true}

diff --git a/exon/exon-bed/Cargo.toml b/exon/exon-bed/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 noodles = {workspace = true, features = ["bed", "core"]}
 object_store = {workspace = true}

diff --git a/exon/exon-cli/Cargo.toml b/exon/exon-cli/Cargo.toml
@@ -13,7 +13,7 @@ version.workspace = true
 clap = {version = "4", features = ["derive", "cargo"]}
 datafusion = {workspace = true}
 datafusion-cli = {version = "35"}
-exon = {path = "../exon-core", version = "0.8.2"}
+exon = {path = "../exon-core", version = "0.8.3"}
 tokio = {workspace = true}
 tracing = "0.1.40"
 tracing-subscriber = {version = "0.3.18", features = ["env-filter"]}
diff --git a/exon/exon-core/Cargo.toml b/exon/exon-core/Cargo.toml
@@ -16,19 +16,19 @@ arrow = {workspace = true}
 async-trait = {workspace = true}
 bytes = "1.5.0"
 datafusion = {workspace = true}
-exon-bam = {path = "../exon-bam", version = "0.8.2"}
-exon-bcf = {path = "../exon-bcf", version = "0.8.2"}
-exon-bed = {path = "../exon-bed", version = "0.8.2"}
-exon-common = {path = "../exon-common", version = "0.8.2"}
-exon-fasta = {path = "../exon-fasta", version = "0.8.2"}
-exon-fastq = {path = "../exon-fastq", version = "0.8.2"}
-exon-fcs = {path = "../exon-fcs", version = "0.8.2", optional = true}
-exon-genbank = {path = "../exon-genbank", version = "0.8.2", optional = true}
-exon-gff = {path = "../exon-gff", version = "0.8.2"}
-exon-gtf = {path = "../exon-gtf", version = "0.8.2"}
-exon-io = {path = "../exon-io", version = "0.8.2"}
-exon-mzml = {path = "../exon-mzml", version = "0.8.2", optional = true}
-exon-vcf = {path = "../exon-vcf", version = "0.8.2"}
+exon-bam = {path = "../exon-bam", version = "0.8.3"}
+exon-bcf = {path = "../exon-bcf", version = "0.8.3"}
+exon-bed = {path = "../exon-bed", version = "0.8.3"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
+exon-fasta = {path = "../exon-fasta", version = "0.8.3"}
+exon-fastq = {path = "../exon-fastq", version = "0.8.3"}
+exon-fcs = {path = "../exon-fcs", version = "0.8.3", optional = true}
+exon-genbank = {path = "../exon-genbank", version = "0.8.3", optional = true}
+exon-gff = {path = "../exon-gff", version = "0.8.3"}
+exon-gtf = {path = "../exon-gtf", version = "0.8.3"}
+exon-io = {path = "../exon-io", version = "0.8.3"}
+exon-mzml = {path = "../exon-mzml", version = "0.8.3", optional = true}
+exon-vcf = {path = "../exon-vcf", version = "0.8.3"}
 futures = {workspace = true}
 itertools = "0.12.0"
 noodles = {workspace = true, features = ["bed", "tabix", "core", "async", "bcf", "vcf", "bgzf", "csi", "gtf"]}

diff --git a/exon/exon-fasta/Cargo.toml b/exon/exon-fasta/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 noodles = {workspace = true, features = ["core", "async", "fasta"]}
 object_store = {workspace = true}

diff --git a/exon/exon-fastq/Cargo.toml b/exon/exon-fastq/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 noodles = {workspace = true, features = ["async", "fastq"]}
 object_store = {workspace = true}

diff --git a/exon/exon-fcs/Cargo.toml b/exon/exon-fcs/Cargo.toml
@@ -13,7 +13,7 @@ version.workspace = true
 [dependencies]
 arrow = {workspace = true}
 byteorder = {version = "1.5.0"}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 object_store = {workspace = true}
 tokio = {workspace = true}

diff --git a/exon/exon-genbank/Cargo.toml b/exon/exon-genbank/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 gb-io = {version = "0.7.1"}
 object_store = {workspace = true}

diff --git a/exon/exon-gff/Cargo.toml b/exon/exon-gff/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 noodles = {workspace = true, features = ["gff", "core"]}
 object_store = {workspace = true}

diff --git a/exon/exon-gtf/Cargo.toml b/exon/exon-gtf/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 noodles = {workspace = true, features = ["gtf"]}
 object_store = {workspace = true}

diff --git a/exon/exon-mzml/Cargo.toml b/exon/exon-mzml/Cargo.toml
@@ -14,7 +14,7 @@ version.workspace = true
 arrow = {workspace = true}
 base64 = {version = "0.21"}
 byteorder = {version = "1.5.0"}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 flate2 = {version = "1.0.28"}
 futures = {workspace = true}
 object_store = {workspace = true}

diff --git a/exon/exon-vcf/Cargo.toml b/exon/exon-vcf/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = {workspace = true}
-exon-common = {path = "../exon-common", version = "0.8.2"}
+exon-common = {path = "../exon-common", version = "0.8.3"}
 futures = {workspace = true}
 noodles = {workspace = true, features = ["core", "async", "vcf", "bgzf"]}
 noodles-bgzf = {version = "0.26.0", features = ["libdeflate"]}