release: bump to version v0.29.0

wheretrue · Jul 15, 2024 · 9d0011c · 9d0011c
1 parent e2b5e23
commit 9d0011c
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diff --git a/.github/workflows/build-cli-image.yml b/.github/workflows/build-cli-image.yml
@@ -37,5 +37,5 @@ jobs:
           build-args: |
             CARGO_BUILD_PROFILE=release
           push: true
-          tags: public.ecr.aws/p3a4z1t3/exon-cli:latest,public.ecr.aws/p3a4z1t3/exon-cli:v0.28.1
+          tags: public.ecr.aws/p3a4z1t3/exon-cli:latest,public.ecr.aws/p3a4z1t3/exon-cli:v0.29.0
           platforms: linux/amd64,linux/arm64
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,11 @@
 # CHANGELOG
 
+## v0.29.0 (2024-07-15)
+
+### Feat
+
+- add read_sdf api (#576)
+
 ## v0.28.1 (2024-07-15)
 
 ## v0.28.0 (2024-07-15)

diff --git a/Cargo.lock b/Cargo.lock
diff --git a/Cargo.toml b/Cargo.toml
@@ -4,7 +4,7 @@ homepage = "https://www.wheretrue.dev/docs/exon/"
 license = "Apache-2.0"
 readme = "README.md"
 repository = "https://github.com/wheretrue/exon"
-version = "0.28.1"
+version = "0.29.0"
 
 [workspace]
 members = [

diff --git a/cz.json b/cz.json
@@ -1,7 +1,7 @@
 {
   "commitizen": {
     "name": "cz_conventional_commits",
-    "version": "0.28.1",
+    "version": "0.29.0",
     "tag_format": "v$version",
     "version_files": [
       "Cargo.toml",

diff --git a/exon/exon-bam/Cargo.toml b/exon/exon-bam/Cargo.toml
@@ -10,8 +10,8 @@ version = { workspace = true }
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
-exon-sam = { path = "../exon-sam", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
+exon-sam = { path = "../exon-sam", version = "0.29.0" }
 futures = { workspace = true }
 itertools = "0.13"
 noodles = { workspace = true, features = [

diff --git a/exon/exon-bcf/Cargo.toml b/exon/exon-bcf/Cargo.toml
@@ -12,8 +12,8 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
-exon-vcf = { path = "../exon-vcf", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
+exon-vcf = { path = "../exon-vcf", version = "0.29.0" }
 futures = { workspace = true }
 noodles = { workspace = true, features = ["core", "async", "bcf", "bgzf"] }
 object_store = { workspace = true }

diff --git a/exon/exon-bed/Cargo.toml b/exon/exon-bed/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 futures = { workspace = true }
 noodles = { workspace = true, features = ["bed", "core"] }
 object_store = { workspace = true }

diff --git a/exon/exon-bigwig/Cargo.toml b/exon/exon-bigwig/Cargo.toml
@@ -10,7 +10,7 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 noodles = { workspace = true, features = ["core"] }
 futures = { workspace = true }
 bigtools = "0.5"

diff --git a/exon/exon-cli/Cargo.toml b/exon/exon-cli/Cargo.toml
@@ -13,7 +13,7 @@ version.workspace = true
 datafusion-cli = { version = "40" }
 clap = { version = "4", features = ["derive", "cargo"] }
 datafusion = { workspace = true }
-exon = { path = "../exon-core", version = "0.28.1", features = ["default"] }
+exon = { path = "../exon-core", version = "0.29.0", features = ["default"] }
 tokio = { workspace = true }
 tracing = { workspace = true }
 tracing-subscriber = { version = "0.3.18", features = ["env-filter"] }
diff --git a/exon/exon-core/Cargo.toml b/exon/exon-core/Cargo.toml
@@ -15,23 +15,23 @@ arrow = { workspace = true }
 async-trait = { workspace = true }
 bytes = "1.6.1"
 datafusion = { workspace = true }
-exon-bam = { path = "../exon-bam", version = "0.28.1" }
-exon-sdf = { path = "../exon-sdf", version = "0.28.1" }
-exon-bcf = { path = "../exon-bcf", version = "0.28.1" }
-exon-bed = { path = "../exon-bed", version = "0.28.1" }
-exon-cram = { path = "../exon-cram", version = "0.28.1" }
-exon-common = { path = "../exon-common", version = "0.28.1" }
-exon-fasta = { path = "../exon-fasta", version = "0.28.1" }
-exon-fastq = { path = "../exon-fastq", version = "0.28.1" }
-exon-fcs = { path = "../exon-fcs", version = "0.28.1", optional = true }
-exon-genbank = { path = "../exon-genbank", version = "0.28.1", optional = true }
-exon-gff = { path = "../exon-gff", version = "0.28.1" }
-exon-gtf = { path = "../exon-gtf", version = "0.28.1" }
-exon-io = { path = "../exon-io", version = "0.28.1" }
-exon-mzml = { path = "../exon-mzml", version = "0.28.1", optional = true }
-exon-sam = { path = "../exon-sam", version = "0.28.1" }
-exon-vcf = { path = "../exon-vcf", version = "0.28.1" }
-exon-bigwig = { path = "../exon-bigwig", version = "0.28.1" }
+exon-bam = { path = "../exon-bam", version = "0.29.0" }
+exon-sdf = { path = "../exon-sdf", version = "0.29.0" }
+exon-bcf = { path = "../exon-bcf", version = "0.29.0" }
+exon-bed = { path = "../exon-bed", version = "0.29.0" }
+exon-cram = { path = "../exon-cram", version = "0.29.0" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
+exon-fasta = { path = "../exon-fasta", version = "0.29.0" }
+exon-fastq = { path = "../exon-fastq", version = "0.29.0" }
+exon-fcs = { path = "../exon-fcs", version = "0.29.0", optional = true }
+exon-genbank = { path = "../exon-genbank", version = "0.29.0", optional = true }
+exon-gff = { path = "../exon-gff", version = "0.29.0" }
+exon-gtf = { path = "../exon-gtf", version = "0.29.0" }
+exon-io = { path = "../exon-io", version = "0.29.0" }
+exon-mzml = { path = "../exon-mzml", version = "0.29.0", optional = true }
+exon-sam = { path = "../exon-sam", version = "0.29.0" }
+exon-vcf = { path = "../exon-vcf", version = "0.29.0" }
+exon-bigwig = { path = "../exon-bigwig", version = "0.29.0" }
 futures = { workspace = true }
 itertools = "0.13"
 noodles = { workspace = true, features = [

diff --git a/exon/exon-cram/Cargo.toml b/exon/exon-cram/Cargo.toml
@@ -13,8 +13,8 @@ version.workspace = true
 [dependencies]
 arrow = { workspace = true }
 coitrees = "0.4.0"
-exon-common = { path = "../exon-common", version = "0.28.1" }
-exon-sam = { path = "../exon-sam", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
+exon-sam = { path = "../exon-sam", version = "0.29.0" }
 futures = { workspace = true }
 noodles = { workspace = true, features = ["core", "async", "cram", "fasta"] }
 object_store = { workspace = true }

diff --git a/exon/exon-fasta/Cargo.toml b/exon/exon-fasta/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 futures = { workspace = true }
 noodles = { workspace = true, features = ["core", "async", "fasta"] }
 object_store = { workspace = true }

diff --git a/exon/exon-fastq/Cargo.toml b/exon/exon-fastq/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 futures = { workspace = true }
 noodles = { workspace = true, features = ["async", "fastq"] }
 object_store = { workspace = true }

diff --git a/exon/exon-fcs/Cargo.toml b/exon/exon-fcs/Cargo.toml
@@ -13,7 +13,7 @@ version.workspace = true
 [dependencies]
 arrow = { workspace = true }
 byteorder = { version = "1.5.0" }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 futures = { workspace = true }
 object_store = { workspace = true }
 tokio = { workspace = true, features = ["fs"] }

diff --git a/exon/exon-genbank/Cargo.toml b/exon/exon-genbank/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 futures = { workspace = true }
 gb-io = { version = "0.7.1" }
 object_store = { workspace = true }

diff --git a/exon/exon-gff/Cargo.toml b/exon/exon-gff/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 futures = { workspace = true }
 noodles = { workspace = true, features = ["core", "gff", "async"] }
 object_store = { workspace = true }

diff --git a/exon/exon-gtf/Cargo.toml b/exon/exon-gtf/Cargo.toml
@@ -12,7 +12,7 @@ version.workspace = true
 
 [dependencies]
 arrow = { workspace = true }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 futures = { workspace = true }
 noodles = { workspace = true, features = ["gtf"] }
 object_store = { workspace = true }

diff --git a/exon/exon-mzml/Cargo.toml b/exon/exon-mzml/Cargo.toml
@@ -14,7 +14,7 @@ version.workspace = true
 arrow = { workspace = true }
 base64 = { version = "0.22" }
 byteorder = { version = "1.5.0" }
-exon-common = { path = "../exon-common", version = "0.28.1" }
+exon-common = { path = "../exon-common", version = "0.29.0" }
 flate2 = { version = "1.0.30" }
 futures = { workspace = true }
 object_store = { workspace = true }