Test

build(deps): bump tracing-subscriber from 0.3.17 to 0.3.18 #953

	name: Test

	on:
	push:

	jobs:
	windows:
	runs-on: windows-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions-rs/toolchain@v1
	with:
	toolchain: stable

	- name: run tests
	run: \|
	cargo test --package exon --package exon-bam --test sqllogictests --all-features

	linux:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3

	- uses: actions-rs/toolchain@v1
	with:
	toolchain: stable

	- name: Login to GitHub Container Registry
	uses: docker/login-action@v1
	with:
	registry: ghcr.io
	username: ${{ github.actor }}
	password: ${{ secrets.GITHUB_TOKEN }}

	- uses: actions/setup-python@v4
	with:
	python-version: '3.9'

	- name: Install aws and awslocal
	run: \|
	pip install awscli
	pip install awscli-local

	- name: Run clippy
	run: \|
	cargo clippy --all-targets --all-features -- -D warnings

	- name: Run tests and sqllogictests
	env:
	AWS_DEFAULT_REGION: us-west-2
	AWS_ACCESS_KEY_ID: test
	AWS_SECRET_ACCESS_KEY: test
	AWS_ENDPOINT_URL: http://localhost:4566
	AWS_ALLOW_HTTP: true
	run: \|
	docker compose up -d
	sleep 5
	aws --endpoint-url=http://localhost:4566 s3 mb s3://test-bucket
	awslocal s3api put-object --bucket test-bucket --key test.fasta --body ./exon/exon-core/test-data/datasources/fasta/test.fasta

	cargo test --package exon --package exon-bam --test sqllogictests --all-features

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