🐛 Bug Fixes
Add epsilon to standard deviation normalization @msschwartz21 (#119)
Cast data to correct type in `get_image_features` @msschwartz21 (#114)
This PR fixes a bug in get_image_features. If the X data is passed in with an integer type (instead of float), the output of crop_mode='fixed' and norm=True is incorrect. In the examples below, the first image is incorrect while the second is correct.
This PR eliminates the bug by casting X data to float32 and y data to int32 to avoid incorrect use of the function.
🧰 Maintenance
Bump version to 0.6.5 @msschwartz21 (#120)
Bump default action versions. @rossbar (#116)
Bump action versions to keep CI current, c.f. vanvalenlab/deepcell-tf#653
Reuse indexed array to avoid extra array copies. @rossbar (#115)
A minor change that should improve performance. Unfortunately NumPy isn't smart enough to cache indexing results for reuse, so each app[idx] invocation of advanced indexing is actually creating a new array (as opposed to a view), resulting in both more memory usage and additional computation time for each allocation. There should be a significant performance boost by only performing the advanced indexing operation once and reusing the result.
Not critically important - just something I noticed while reviewing #114!
Lint with ruff @rossbar (#113)
Add the ruff linter to the development workflow.
Includes basic configuration as well as some minor tweaks/improvements to pass the linter. The configuration is minimal and reflects the original pytest-pep8 configuration.
Fix failures related to expired usage patterns in dependencies @rossbar (#112)
Removes the global warnings filter for deprecation warnings in the test suite and fixes the issues that appear as a result.
