update vignettes and dependencies #29

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6 errors and 3 warnings

--- re-building ‘pseudobulk_transcriptomics.Rmd’ using rmarkdown

processing vignette 'solutions_transcriptomics.Rmd' failed with diagnostics:

processing vignette 'spatial_bioconductor_transcriptomics.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

No files were found with the provided path: /__w/tidyomicsWorkshop/tidyomicsWorkshop/check. No artifacts will be uploaded.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, actions/cache@v1, actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/