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group mutate revamp#109

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ppaxisa wants to merge 10 commits intotidyomics:develtidyomics/plyranges:develfrom ImmuneAxisa:mutate_grp_revampImmuneAxisa/plyranges:mutate_grp_revampCopy head branch name to clipboard

+101-40

Commits

Commits on Sep 10, 2023

• modified mutate function to rely on dplyr for metadata. core columns mutate rely on old mutate_core and mutate_grp functions

  ppaxisa

  committed
  cd72a0b

Commits on Sep 11, 2023

• clean up mutate grouping after df conversion

  ppaxisa

  committed
  2be51d5

Commits on Sep 13, 2023

• repair id and name to column functions given new mutate function

  ppaxisa

  committed
  af4508a

Commits on Sep 14, 2023

• ungroup range object before converting to df, avoids error

  ppaxisa

  committed
  05cbd1b

Commits on Nov 10, 2023

• adjusting test to avoid using S4Vectors class with mutate. mutate seemed unnecessary to pass the test in the first place.

  ppaxisa

  committed
  59957fd

• modify expand method for plyranges to accomodate list columns: no use of S4Vectors classes with mutate so everything is coerced to base::list type.

  ppaxisa

  committed
  8158560

• remove S4Vectors types from example with mutate

  ppaxisa

  committed
  6e0ff1b

• fix some check errors

  ppaxisa

  committed
  43ffccc

Commits on Jan 25, 2024

• vanilla dplyr mutate only on grouped ranges

  ppaxisa

  committed
  b3219ec

Commits on Jan 26, 2024

• roll back expand methods and test to use S4vectors List methods

  ppaxisa

  committed
  103d762