Added Yoav Kan-Tor et al. 2024 #64
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This is how I implemented it:
Belongs to transformer evaluation:
Paper: (Preprint) https://arxiv.org/abs/2412.04075
Code: https://github.com/BiomedSciAI/gene-benchmark (reproducible)
Omic Modalities: Natural Language, scRNAseq, protein sequence, DNA sequence
Evaluated Transformers: Mistral, MPnet, CellPLM, GeneFormer, scGPT, DNABert2, ESM (plus bag-of-words, gene2vec)
Tasks: genomic properties, gene regulatory functions, gene localization, gene biological processes, protein properties
Notes: "-"