Fixed scChat (#61)

* Smaller Font Size * scChat --------- Co-authored-by: Paul O.-P <[email protected]> Co-authored-by: Paul O.-P <[email protected]>
theislab · Dec 18, 2024 · 26f72d6 · 26f72d6
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Showing 9 changed files with 26 additions and 10 deletions.
diff --git a/_data/transformer-llms.yml b/_data/transformer-llms.yml
@@ -8,12 +8,12 @@
     text: "[ð\x9F\x9B\_GitHub](https://github.com/li-group/scChat)"
     url: https://github.com/li-group/scChat
   omic_modalities: scRNA-seq
-  pre_training_dataset: [GPT-4o](https://api.openai.com/) 
+  pre_training_dataset: '[GPT-4o](https://api.openai.com/)' 
   input_embedding: 'Other: Natural language descriptions'
-  architecture: '[GPT-4o](https://api.openai.com/) '
+  architecture: '[GPT-4o](https://api.openai.com/)'
   ssl_tasks: '-'
   supervised_tasks: '-'
-  zero_shot_tasks: cell type annotation, research hypothesis validation and generation, experiment design suggestions.
+  zero_shot_tasks: Cell type annotation, research hypothesis validation and generation, experiment design suggestions
 - model: CELLama
   paper:
     type: preprint

diff --git a/_site/_data/transformer-llms.yml b/_site/_data/transformer-llms.yml
@@ -1,3 +1,19 @@
+- model: scChat
+  paper:
+    type: preprint
+    text: '[Lu et al. 2024](https://www.biorxiv.org/content/10.1101/2024.10.01.616063v2.abstract)'
+    url: https://www.biorxiv.org/content/10.1101/2024.10.01.616063v2.abstract
+  code:
+    type: reproducible
+    text: "[ð\x9F\x9B\_GitHub](https://github.com/li-group/scChat)"
+    url: https://github.com/li-group/scChat
+  omic_modalities: scRNA-seq
+  pre_training_dataset: '[GPT-4o](https://api.openai.com/)' 
+  input_embedding: 'Other: Natural language descriptions'
+  architecture: '[GPT-4o](https://api.openai.com/)'
+  ssl_tasks: '-'
+  supervised_tasks: '-'
+  zero_shot_tasks: Cell type annotation, research hypothesis validation and generation, experiment design suggestions
 - model: CELLama
   paper:
     type: preprint

diff --git a/_site/_pages/implementations.html b/_site/_pages/implementations.html
diff --git a/_site/feed.xml b/_site/feed.xml
@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="http://localhost:4000/single-cell-transformer-papers/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/single-cell-transformer-papers/" rel="alternate" type="text/html" /><updated>2024-12-11T08:49:51+01:00</updated><id>http://localhost:4000/single-cell-transformer-papers/feed.xml</id><title type="html">Transformers in Single-Cell Omics</title><subtitle>A curated collection of papers on transformers in single-cell analysis</subtitle></feed>
+<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="http://localhost:4000/single-cell-transformer-papers/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/single-cell-transformer-papers/" rel="alternate" type="text/html" /><updated>2024-12-18T09:50:36+01:00</updated><id>http://localhost:4000/single-cell-transformer-papers/feed.xml</id><title type="html">Transformers in Single-Cell Omics</title><subtitle>A curated collection of papers on transformers in single-cell analysis</subtitle></feed>
diff --git a/_site/implementations.html b/_site/implementations.html
diff --git a/_site/index.html b/_site/index.html
diff --git a/_site/single-cell-transformers.html b/_site/single-cell-transformers.html
diff --git a/_site/transformer-evaluation.html b/_site/transformer-evaluation.html
diff --git a/_site/transformer-llms.html b/_site/transformer-llms.html
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="http://localhost:4000/single-cell-transformer-papers/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/single-cell-transformer-papers/" rel="alternate" type="text/html" /><updated>2024-12-11T08:49:51+01:00</updated><id>http://localhost:4000/single-cell-transformer-papers/feed.xml</id><title type="html">Transformers in Single-Cell Omics</title><subtitle>A curated collection of papers on transformers in single-cell analysis</subtitle></feed>
		<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.3.4">Jekyll</generator><link href="http://localhost:4000/single-cell-transformer-papers/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/single-cell-transformer-papers/" rel="alternate" type="text/html" /><updated>2024-12-18T09:50:36+01:00</updated><id>http://localhost:4000/single-cell-transformer-papers/feed.xml</id><title type="html">Transformers in Single-Cell Omics</title><subtitle>A curated collection of papers on transformers in single-cell analysis</subtitle></feed>