Skip to content

Issues: theislab/cellrank

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

19 Open 708 Closed
19 Open 708 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

cellrank meets Cytotace, I got the reverse result with the real situation question Further information is requested
#1242 opened Dec 20, 2024 by forrwill
@Marius1311 @WeilerP
1
Gene trend plotting with pygam with scipy>1.14.0 bug Something isn't working
#1241 opened Dec 19, 2024 by WeilerP
@michalk8
1
Why not take scipy implementation of Pearson correlation for computing lineage drivers? question Further information is requested
#1231 opened Oct 22, 2024 by VladimirShitov
@Marius1311 @WeilerP
3
Compute and plot gene module scores over pseudotime enhancement New feature or request
#1202 opened Jun 13, 2024 by sohrabsa
@michalk8
2
Question about Transition Matrix and Initial States question Further information is requested
#1198 opened May 10, 2024 by jennylsmith
@Marius1311 @WeilerP
1
Extract gene expression on pseudotime from cellrank.pl.gene_trends question Further information is requested
#1197 opened May 2, 2024 by TinyTasy
@Marius1311 @WeilerP
A question about ‘g_fwd.compute_fate_probabilities(preconditioner='ilu', tol=1e-7, solver='direct')’ question Further information is requested
#1194 opened Apr 26, 2024 by liuyang218622
@Marius1311 @WeilerP
5
ValueError: Transition matrix is not row stochastic, 8216 rows do not sum to 1. bug Something isn't working
#1192 opened Apr 25, 2024 by simonekats
@michalk8
13
gene expression trends line plots grouped by sample conditions question Further information is requested
#1191 opened Apr 22, 2024 by qinting
@Marius1311 @WeilerP
1
In cases the same cluster is estimated as initial and terminal states question Further information is requested
#1189 opened Apr 11, 2024 by st-tky
@Marius1311 @WeilerP
4
Proper use of the "Lineages" Parameter for Lineage Drivers question Further information is requested
#1182 opened Mar 28, 2024 by jwalewski
@Marius1311 @WeilerP
10
Update type hinting
#1178 opened Mar 20, 2024 by WeilerP
@WeilerP
3
Test CI fail with pytest==8.1.0
#1173 opened Mar 4, 2024 by WeilerP
1
@WeilerP @michalk8
1
BaseModel.prepare() unexpected behaviour bug Something isn't working
#1152 opened Jan 19, 2024 by nrclaudio
@michalk8
2
Segfault / python free() invalid size error during compute_transition_matrix bug Something isn't working
#1148 opened Dec 22, 2023 by KforKuma
@michalk8
5
RealTimeKernel.from_moscot(tp) Out of Memory question Further information is requested
#1146 opened Dec 12, 2023 by AlinaKurjan
@Marius1311
27
RuntimeError: No coarse-grained stationary distribution found question Further information is requested
#1135 opened Oct 24, 2023 by xyxuq
@Marius1311
6
Plot initial/terminal macrostates in one plot enhancement New feature or request
#1005 opened Mar 20, 2023 by michalk8
@michalk8
Fate probabilities towards aggregated terminal states enhancement New feature or request
#1000 opened Feb 28, 2023 by Marius1311
@WeilerP @michalk8
3
ProTip! Follow long discussions with comments:>50.