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Installation
Nadja Brait edited this page Jul 17, 2024
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Install Bioconda or miniforge on your system if not already present, then install detectEVE using these shell commands:
# download workflow
git clone https://github.com/thackl/detectEVE
cd detectEVE
# install dependencies via conda or mamba
mamba create -n detectEVE
mamba activate detectEVE
mamba env update --file workflow/envs/env.yaml
# check if detectEVE works
./detectEVE -h
# download and prep databases
./detectEVE --setup-databases [--snake ARGS]
For more information on database setup, see database setup