Fix writing mrc file bug (#40)

* Fixes bug if mrc file doesnt exist * Streamlined * Update lil_aretomo/utils.py Co-authored-by: alisterburt <[email protected]>
teamtomo · Sep 1, 2022 · e7cea7e · e7cea7e
1 parent 0c3db23
commit e7cea7e
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/lil_aretomo/utils.py b/lil_aretomo/utils.py
@@ -19,6 +19,7 @@ def prepare_output_directory(
     directory.mkdir(exist_ok=True, parents=True)
 
     tilt_series_file = directory / f'{basename}.mrc'
+    data_on_disk_shape = None
     if tilt_series_file.exists():
         with mrcfile.open(tilt_series_file, header_only=True) as mrc:
             data_on_disk_shape = (mrc.header.nz, mrc.header.ny, mrc.header.nx)