Feat: on-disk RevIndex based on RocksDB #4100
Workflow file for this run
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name: "Dev env instructions" | |
on: | |
pull_request: | |
push: | |
branches: [latest] | |
jobs: | |
nix: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: cachix/install-nix-action@v23 | |
with: | |
extra_nix_config: | | |
access-tokens = github.com=${{ secrets.GITHUB_TOKEN }} | |
- uses: cachix/cachix-action@v12 | |
with: | |
name: sourmash-bio | |
authToken: '${{ secrets.CACHIX_AUTH_TOKEN }}' | |
- run: nix run .# -- --version | |
- run: nix-shell --command "tox -e py310" | |
mamba: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: cache conda | |
uses: actions/cache@v3 | |
env: | |
CACHE_NUMBER: 0 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
- name: setup conda | |
uses: conda-incubator/setup-miniconda@3b0f2504dd76ef23b6d31f291f4913fb60ab5ff3 | |
with: | |
auto-update-conda: true | |
python-version: 3.9 | |
channels: conda-forge,bioconda | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
use-mamba: true | |
mamba-version: "*" | |
activate-environment: sourmash_dev | |
auto-activate-base: false | |
use-only-tar-bz2: true | |
- name: install dependencies | |
shell: bash -l {0} | |
run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc libstdcxx-ng | |
- name: run tests for 3.9 | |
shell: bash -l {0} | |
run: tox -e py39 |