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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,110 @@ | ||
| #!/bin/bash | ||
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| # Grant posit0001 sudo rights | ||
| echo "posit0001 ALL=NOPASSWD: ALL" >> /etc/sudoers | ||
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| # Install Posit Workbench | ||
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| PWB_CONFIG_DIR=$1 | ||
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| PWB_VERSION=$2 | ||
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| export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin | ||
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| # Add rstudio-server user and group | ||
| groupadd --system --gid 900 rstudio-server | ||
| useradd -s /bin/bash -m --system --gid rstudio-server --uid 900 rstudio-server | ||
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| # Install software | ||
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| if ( ! dpkg -l gdebi-core >& /dev/null); then | ||
| apt-get update | ||
| apt-get install -y gdebi | ||
| fi | ||
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| while true | ||
| do | ||
| if [ -d /opt/rstudio/scripts ]; then | ||
| pushd /opt/rstudio/scripts | ||
| gdebi -n rstudio-workbench-${PWB_VERSION}-amd64.deb | ||
| popd | ||
| break | ||
| fi | ||
| done | ||
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| VSCODE_EXTDIR=/usr/local/rstudio/code-server | ||
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| mkdir -p /usr/local/rstudio/code-server | ||
| chmod a+rx /usr/local/rstudio/code-server | ||
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| for extension in quarto.quarto \ | ||
| [email protected] \ | ||
| [email protected] | ||
| do | ||
| /usr/lib/rstudio-server/bin/pwb-code-server/bin/code-server --extensions-dir=$VSCODE_EXTDIR \ | ||
| --install-extension $extension | ||
| done | ||
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| chmod a+rx /usr/local/rstudio/code-server | ||
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| # wait until the workbench config files are there (deployed by head-node) | ||
| while true ; do if [ -f $PWB_CONFIG_DIR/rserver.conf ]; then break; fi; sleep 1; done ; echo "PWB config files found !" | ||
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| for i in server launcher | ||
| do | ||
| mkdir -p /etc/systemd/system/rstudio-$i.service.d | ||
| echo -e "[Service]\nEnvironment=\"RSTUDIO_CONFIG_DIR=$PWB_CONFIG_DIR\"" > /etc/systemd/system/rstudio-$i.service.d/override.conf | ||
| done | ||
| # We are on a login node and hence will need to enable rstudio-server and rstudio-launcher | ||
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| # scalability | ||
| sysctl -w net.unix.max_dgram_qlen=8192 | ||
| sysctl -w net.core.netdev_max_backlog=65535 | ||
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| systemctl daemon-reload | ||
| systemctl stop rstudio-server | ||
| systemctl stop rstudio-launcher | ||
| killall apache2 | ||
| rm -rf /var/log/rstudio | ||
| systemctl start rstudio-launcher | ||
| systemctl start rstudio-server | ||
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| # Touch a file in /opt/rstudio to signal that workbench is running on this server | ||
| touch /opt/rstudio/workbench-`hostname`.state | ||
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| #if ( ! crontab -l | grep rstudio ); then | ||
| # (crontab -l ; echo "0-59/1 * * * * /opt/rstudio/scripts/rc.pwb")| crontab - | ||
| #fi | ||
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| if (EASYBUILD_SUPPORT); then | ||
| apt-get update && apt-get install -y lmod | ||
| cat << EOF > /etc/profile.d/modulepath.sh | ||
| #!/bin/bash | ||
| export MODULEPATH=/opt/apps/easybuild/modules/all | ||
| EOF | ||
| fi | ||
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| if ( ! grep AD_DNS /etc/hosts >& /dev/null ); then | ||
| echo "AD_DNS pwb.posit.co" >> /etc/hosts | ||
| fi | ||
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| if ( ! grep posit0001 /etc/sudoers >& /dev/null ); then | ||
| echo "posit0001 ALL=NOPASSWD: ALL" >> /etc/sudoers | ||
| fi | ||
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| if ( ! grep rstudio-server /etc/security/limits.conf ); then | ||
| echo "rstudio-server soft nofile 32768" >> /etc/security/limits.conf | ||
| echo "rstudio-server hard nofile 32768" >> /etc/security/limits.conf | ||
| fi | ||
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| if ( ! mount | grep /scratch ); then | ||
| # create scratch folder as part of EFS fs | ||
| mkdir -p /scratch /opt/rstudio/scratch | ||
| efsmount=`cat /etc/fstab | grep rstudio | awk '{print $1}'` | ||
| mount -t efs ${efsmount}scratch /scratch | ||
| fi | ||
|
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