Bump version: 1.4.1.9005 → 1.4.1.9006

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.4.1.9005
+current_version = 1.4.1.9006
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\.(?P<dev>\d+))?

.github/workflows/build_conda_recipes.yaml

@@ -11,7 +11,7 @@ env:
   recipe_path: conda/recipe
   env_yml_path: conda/env/yml
   env_lock_path: conda/env/lock
-  VERSION: '1.4.1.9005' # versioned by bump2version
+  VERSION: '1.4.1.9006' # versioned by bump2version
 jobs:
   build_pcgrr_conda_pkg:
     # When merging to one of the branches above and the commit message matches

conda/env/yml/pcgr.yml

@@ -6,7 +6,7 @@ channels:
   - conda-forge
 
 dependencies:
-  - pcgr::pcgr ==1.4.1.9005 # versioned by bump2version
+  - pcgr::pcgr ==1.4.1.9006 # versioned by bump2version
   - bedtools
   - bcftools
   - cyvcf2

conda/env/yml/pcgrr.yml

@@ -7,7 +7,7 @@ channels:
 
 dependencies:
   - python
-  - pcgr::r-pcgrr ==1.4.1.9005 # versioned by bump2version
+  - pcgr::r-pcgrr ==1.4.1.9006 # versioned by bump2version
   - pcgr::r-cpsr
   - r-argparse
   - bioconductor-bsgenome.hsapiens.ucsc.hg38

conda/env/yml/pkgdown.yml

@@ -4,7 +4,7 @@ channels:
   - bioconda
   - conda-forge
 dependencies:
-  - pcgr::r-pcgrr ==1.4.1.9005 # versioned by bump2version
+  - pcgr::r-pcgrr ==1.4.1.9006 # versioned by bump2version
   - r-pkgdown
   - r-readr
   - pandoc

conda/recipe/pcgr/meta.yaml

@@ -1,6 +1,6 @@
 package:
   name: pcgr
-  version: 1.4.1.9005 # versioned by bump2version
+  version: 1.4.1.9006 # versioned by bump2version
 
 source:
   path: ../../..

conda/recipe/pcgrr/meta.yaml

@@ -1,6 +1,6 @@
 package:
   name: r-pcgrr
-  version: 1.4.1.9005 # versioned by bump2version
+  version: 1.4.1.9006 # versioned by bump2version
 
 source:
   path: ../../../pcgrr

pcgr/_version.py

@@ -1,2 +1,2 @@
 # versioned by bump2version
-__version__ = '1.4.1.9005'
+__version__ = '1.4.1.9006'

pcgrr/DESCRIPTION

@@ -1,7 +1,7 @@
 Package: pcgrr
 Type: Package
 Title: Personal Cancer Genome ReporteR
-Version: 1.4.1.9005
+Version: 1.4.1.9006
 Date: 2024-04-27
 Authors@R:
     c(person(given = "Sigve",
@@ -53,6 +53,7 @@ Imports:
     S4Vectors,
     scales,
     stringr,
+    tibble,
     tidyr,
     yaml
 Depends:

pcgrr/vignettes/installation.Rmd

@@ -12,7 +12,7 @@ output: rmarkdown::html_document
   software requirements:
 
 ```bash
-PCGR_VERSION="1.4.1.9005"
+PCGR_VERSION="1.4.1.9006"
 PCGR_REPO="https://raw.githubusercontent.com/sigven/pcgr/v${PCGR_VERSION}/conda/env/lock/"
 PLATFORM="linux" # or "osx"
 
@@ -98,7 +98,7 @@ Download and unpack the latest software release from <https://github.com/sigven/
 Alternatively if you have `git` installed, you can do:
 
 ```bash
-PCGR_VERSION="1.4.1.9005"
+PCGR_VERSION="1.4.1.9006"
 OUTPUT_DIRECTORY="PCGR"
 
 git clone \
@@ -255,7 +255,7 @@ docker container run -it --rm \
     -v /Users/you/dir1/data:/root/pcgr_refdata \
     -v /Users/you/dir2/pcgr_inputs:/root/pcgr_inputs \
     -v /Users/you/dir3/pcgr_outputs:/root/pcgr_outputs \
-    sigven/pcgr:1.4.1.9005 \
+    sigven/pcgr:1.4.1.9006 \
     pcgr \
       --input_vcf "/root/pcgr_inputs/tumor_sample.BRCA.vcf.gz" \
       --vep_dir "/root/vep/.vep" \

pyproject.toml

@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "pcgr"
-version = "1.4.1.9005" # versioned by bump2version
+version = "1.4.1.9006" # versioned by bump2version
 description = "Personal Cancer Genome Reporter (PCGR) - variant interpretation for precision cancer medicine"
 authors = [
     {name = "Sigve Nakken", email = "[email protected]"},