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docs(readme): update er diagram
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cmdoret committed Jan 12, 2024
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# smoc-schema

Metadata schema for the SMOC Multi-Omics Digital Object
Metadata schema for the SMOC Multi-Omics Digital Object.

```mermaid
erDiagram
StudyCollection {
MODOCollection {
}
Study {
datetime start_date
datetime completion_date
MODO {
datetime creation_date
datetime last_update_date
uri source_uri
uriorcurie id
string name
string description
Expand All @@ -21,45 +22,52 @@ Assay {
string description
}
DataEntity {
uri location
string data_path
DataFormat data_format
uriorcurie id
string name
string description
}
ReferenceGenome {
uri location
string data_path
integerList taxon_id
uri source_uri
string version
uriorcurie id
string name
string description
}
ReferenceSequence {
string sequence_md5
uri source_uri
string version
uriorcurie id
string name
string description
}
Sample {
string cell_type
string source_material
Sex sex
integerList taxon_id
stringList collector
uriorcurie id
string name
string description
}
StudyCollection ||--}o Study : "entries"
Study ||--}o Assay : "has_assay"
MODOCollection ||--}o MODO : "entries"
MODO ||--}o Assay : "has_assay"
Assay ||--}o Sample : "has_sample"
Assay ||--}o DataEntity : "has_data"
DataEntity ||--}o Sample : "has_sample"
DataEntity ||--|o ReferenceGenome : "has_reference"
ReferenceGenome ||--}o ReferenceSequence : "has_sequence"
```



## Website

[https://sdsc-ordes.github.io/smoc-schema](https://sdsc-ordes.github.io/smoc-schema)
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