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Condense distance matrix that was not. Pep8 + test pass #1084

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Condense distance matrix that was not. Pep8 + test pass #1084

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c4cebf7
Condense distance matrix that was not. Pep8 + test pass
VincentBeaud Dec 12, 2024
e234fb0
Remove squareform and mute warning in tests
VincentBeaud Dec 19, 2024
3a0d691
Merge branch 'master' into Fix_scipy_warning
VincentBeaud Dec 19, 2024
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3 changes: 3 additions & 0 deletions scripts/tests/test_connectivity_reorder_rois.py
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Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,8 @@

from scilpy import SCILPY_HOME
from scilpy.io.fetcher import fetch_data, get_testing_files_dict
from scipy.cluster.hierarchy import ClusterWarning
from warnings import simplefilter

# If they already exist, this only takes 5 seconds (check md5sum)
fetch_data(get_testing_files_dict(), keys=['connectivity.zip'])
Expand All @@ -18,6 +20,7 @@ def test_help_option(script_runner):


def test_execution_compute_OLO(script_runner, monkeypatch):
simplefilter("ignore", ClusterWarning)
monkeypatch.chdir(os.path.expanduser(tmp_dir.name))
in_sc = os.path.join(SCILPY_HOME, 'connectivity',
'sc_norm.npy')
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