Merge pull request #81 from AlexVCaron/hotfix

Trigger checks on comment

.github/workflows/manual_checks.yml

@@ -0,0 +1,16 @@
+name: Trigger checks manually
+on:
+  issue_comment:
+    types:
+      - created
+      - edited
+
+jobs:
+  checks:
+    if: github.event.issue.pull_request && contains(github.event.comment.body, '@rerun-checks')
+    # Cancel if a newer run is started
+    concurrency:
+      group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+      cancel-in-progress: true
+    uses: ./.github/workflows/run_checks_suite.yml
+    secrets: inherit

.github/workflows/update_pr.yml

@@ -6,7 +6,8 @@ on:
   merge_group:
     types:
       - checks_requested
-    branches: -main
+    branches:
+      - main
 
 # Cancel if a newer run is started
 concurrency:

.vscode/settings.json

@@ -19,5 +19,24 @@
     "testDataExplorer.dataserver": "scil.usherbrooke.ca",
     "testDataExplorer.serverdatalocation": "scil_test_data/dvc-store/files/md5",
     "testDataExplorer.localListingLocation": "tests/test_data.json",
-    "testDataExplorer.remoteListingLocation": "tests/test_data.json"
+    "testDataExplorer.remoteListingLocation": "tests/test_data.json",
+    "nextflow.files.exclude": [
+        ".git",
+        ".nf-test",
+        "work",
+        ".venv",
+        ".nextflow",
+        "node_modules",
+        ".tests/runs"
+    ],
+    "cSpell.ignorePaths": [
+        "package-lock.json",
+        "node_modules",
+        "vscode-extension",
+        ".git/",
+        ".vscode",
+        ".vscode-insiders",
+        ".venv",
+        "tests/.runs"
+    ]
 }

cspell.json

@@ -0,0 +1,24 @@
+{
+    "version": "0.2",
+    "dictionaryDefinitions": [
+        {
+            "name": "neuroscience",
+            "path": "docs/cspell/neuroscience.txt",
+            "addWords": true
+        }
+    ],
+    "dictionaries": [
+        "typescript",
+        "node",
+        "python",
+        "latex",
+        "bash",
+        "companies",
+        "softwareTerms",
+        "misc",
+        "en_US",
+        "en-gb",
+        "filetypes",
+        "neuroscience"
+    ]
+}

docs/cspell/neuroscience.txt

@@ -0,0 +1,103 @@
+*anat*
+*anthony
+*apply*
+*b0*
+*bet*
+*bore
+*bundle*
+*bval*
+*bvec*
+*coeff
+*coeffs
+*container
+*containers
+*core
+*crop*
+*denoise*
+*dwi*
+*easy*
+*extract*
+*fast*
+*field*
+*fodf*
+*frf*
+*image
+*local*
+*mask
+*mean*
+*means*
+*metrics
+*morph*
+*mov*
+*normalise
+*pack
+*par
+*pft*
+*reg*
+*registration*
+*rev*
+*seg*
+*synth*
+*test*
+*to*
+*tracking*
+*transforms
+*volume*
+ants*
+aparc
+arnaud*
+aseg
+connectomics
+denoised
+denoising
+descoteaux
+dev*
+dipy
+dti*
+dtype
+etienne
+evals
+evecs
+extension*
+freesurfer*
+fsl*
+gagnon*
+interp
+medde
+mppca
+mrdegibbs
+mrtrix
+msmt
+neuro*
+nextflow
+nf*
+nifti
+nl*
+nufo
+onge
+parcellation
+parcellations
+preproc
+reconst
+rheault
+robsyme
+sbref
+scilpy
+scilus
+seed*
+ssst
+stanislas
+subworkflow
+subworkflows
+thoumyre
+topup
+track*
+tractoflow
+tractogram
+tractograms
+tractography
+transfo
+uchar
+unbias
+wmparc
+zenodo