Fix atlas handling and transform file issues in `bundle_seg` #257

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Job	Run time
checks / prettier	22s
checks / prettier	22s
checks / prettier	22s
checks / prettier	9s
checks / pre-commit	15s
checks / pre-commit	15s
checks / pre-commit	15s
checks / pre-commit	4s
checks / compute - changes	17s
checks / compute - changes	17s
checks / compute - changes	17s
checks / compute - changes	6s
checks / editorconfig	16s
checks / editorconfig	16s
checks / editorconfig	16s
checks / editorconfig	8s
checks / lint - subworkflows (load_test_data) / lint - load_test_data	52s
checks / lint - subworkflows (load_test_data) / lint - load_test_data	52s
checks / lint - subworkflows (load_test_data) / lint - load_test_data	52s
checks / lint - modules (betcrop/fslbetcrop) / lint - betcrop/fslbetcrop	50s
checks / lint - modules (betcrop/fslbetcrop) / lint - betcrop/fslbetcrop	50s
checks / lint - modules (betcrop/fslbetcrop) / lint - betcrop/fslbetcrop	50s
checks / lint - modules (image/applymask) / lint - image/applymask	52s
checks / lint - modules (image/applymask) / lint - image/applymask	52s
checks / lint - modules (image/applymask) / lint - image/applymask	52s
checks / lint - subworkflows (bundle_seg) / lint - bundle_seg	51s
checks / lint - subworkflows (bundle_seg) / lint - bundle_seg	51s
checks / lint - subworkflows (bundle_seg) / lint - bundle_seg	51s
checks / lint - subworkflows (preproc_dwi) / lint - preproc_dwi	50s
checks / lint - subworkflows (preproc_dwi) / lint - preproc_dwi	50s
checks / lint - subworkflows (preproc_dwi) / lint - preproc_dwi	50s
checks / lint - modules (preproc/eddy) / lint - preproc/eddy	47s
checks / lint - modules (preproc/eddy) / lint - preproc/eddy	47s
checks / lint - modules (preproc/eddy) / lint - preproc/eddy	47s
checks / lint - subworkflows (registration) / lint - registration	49s
checks / lint - subworkflows (registration) / lint - registration	49s
checks / lint - subworkflows (registration) / lint - registration	49s
checks / lint - subworkflows (topup_eddy) / lint - topup_eddy	49s
checks / lint - subworkflows (topup_eddy) / lint - topup_eddy	49s
checks / lint - subworkflows (topup_eddy) / lint - topup_eddy	49s
checks / lint - modules (denoising/mppca) / lint - denoising/mppca	51s
checks / lint - modules (denoising/mppca) / lint - denoising/mppca	51s
checks / lint - modules (denoising/mppca) / lint - denoising/mppca	51s
checks / lint - modules (preproc/gibbs) / lint - preproc/gibbs	55s
checks / lint - modules (preproc/gibbs) / lint - preproc/gibbs	55s
checks / lint - modules (preproc/gibbs) / lint - preproc/gibbs	55s
checks / lint - modules (preproc/topup) / lint - preproc/topup	48s
checks / lint - modules (preproc/topup) / lint - preproc/topup	48s
checks / lint - modules (preproc/topup) / lint - preproc/topup	48s
checks / lint - modules (registration/anattodwi) / lint - registration/anattodwi	50s
checks / lint - modules (registration/anattodwi) / lint - registration/anattodwi	50s
checks / lint - modules (registration/anattodwi) / lint - registration/anattodwi	50s
checks / lint - modules (registration/ants) / lint - registration/ants	56s
checks / lint - modules (registration/ants) / lint - registration/ants	56s
checks / lint - modules (registration/ants) / lint - registration/ants	56s
checks / lint - modules (registration/synthregistration) / lint - registration/synthregistration	57s
checks / lint - modules (registration/synthregistration) / lint - registration/synthregistration	57s
checks / lint - modules (registration/synthregistration) / lint - registration/synthregistration	57s
checks / test (modules/nf-neuro/betcrop/fslbetcrop) / test - modules/nf-neuro/betcrop/fslbetcrop	8m 48s
checks / test (modules/nf-neuro/betcrop/fslbetcrop) / test - modules/nf-neuro/betcrop/fslbetcrop	8m 48s
checks / test (modules/nf-neuro/betcrop/fslbetcrop) / test - modules/nf-neuro/betcrop/fslbetcrop	8m 48s
checks / test (modules/nf-neuro/betcrop/synthbet, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/betcrop/synthbet, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/betcrop/synthbet, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/denoising/mppca) / test - modules/nf-neuro/denoising/mppca	2m 29s
checks / test (modules/nf-neuro/denoising/mppca) / test - modules/nf-neuro/denoising/mppca	2m 29s
checks / test (modules/nf-neuro/denoising/mppca) / test - modules/nf-neuro/denoising/mppca	2m 29s
checks / test (modules/nf-neuro/image/applymask) / test - modules/nf-neuro/image/applymask	2m 38s
checks / test (modules/nf-neuro/image/applymask) / test - modules/nf-neuro/image/applymask	2m 38s
checks / test (modules/nf-neuro/image/applymask) / test - modules/nf-neuro/image/applymask	2m 38s
checks / test (modules/nf-neuro/preproc/topup) / test - modules/nf-neuro/preproc/topup	7m 49s
checks / test (modules/nf-neuro/preproc/topup) / test - modules/nf-neuro/preproc/topup	7m 49s
checks / test (modules/nf-neuro/preproc/topup) / test - modules/nf-neuro/preproc/topup	7m 49s
checks / test (modules/nf-neuro/preproc/eddy) / test - modules/nf-neuro/preproc/eddy	11m 33s
checks / test (modules/nf-neuro/preproc/eddy) / test - modules/nf-neuro/preproc/eddy	11m 33s
checks / test (modules/nf-neuro/preproc/eddy) / test - modules/nf-neuro/preproc/eddy	11m 33s
checks / test (modules/nf-neuro/preproc/gibbs) / test - modules/nf-neuro/preproc/gibbs	2m 18s
checks / test (modules/nf-neuro/preproc/gibbs) / test - modules/nf-neuro/preproc/gibbs	2m 18s
checks / test (modules/nf-neuro/preproc/gibbs) / test - modules/nf-neuro/preproc/gibbs	2m 18s
checks / test (modules/nf-neuro/registration/ants) / test - modules/nf-neuro/registration/ants	9m 29s
checks / test (modules/nf-neuro/registration/ants) / test - modules/nf-neuro/registration/ants	9m 29s
checks / test (modules/nf-neuro/registration/ants) / test - modules/nf-neuro/registration/ants	9m 29s
checks / test (modules/nf-neuro/registration/anattodwi) / test - modules/nf-neuro/registration/anattodwi	10m 12s
checks / test (modules/nf-neuro/registration/anattodwi) / test - modules/nf-neuro/registration/anattodwi	10m 12s
checks / test (modules/nf-neuro/registration/anattodwi) / test - modules/nf-neuro/registration/anattodwi	10m 12s
checks / test (modules/nf-neuro/registration/easyreg, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/registration/easyreg, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/registration/easyreg, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/registration/synthregistration) / test - modules/nf-neuro/registration/synthregistration	3m 43s
checks / test (modules/nf-neuro/registration/synthregistration) / test - modules/nf-neuro/registration/synthregistration	1s
checks / test (modules/nf-neuro/registration/synthregistration) / test - modules/nf-neuro/registration/synthregistration	3m 59s
checks / test (modules/nf-neuro/segmentation/synthseg, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/segmentation/synthseg, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (modules/nf-neuro/segmentation/synthseg, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (subworkflows/nf-neuro/bundle_seg) / test - subworkflows/nf-neuro/bundle_seg	7m 48s
checks / test (subworkflows/nf-neuro/bundle_seg) / test - subworkflows/nf-neuro/bundle_seg	7m 48s
checks / test (subworkflows/nf-neuro/bundle_seg) / test - subworkflows/nf-neuro/bundle_seg	7m 48s
checks / test (subworkflows/nf-neuro/anatomical_segmentation, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (subworkflows/nf-neuro/anatomical_segmentation, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (subworkflows/nf-neuro/anatomical_segmentation, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (subworkflows/nf-neuro/preproc_t1, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (subworkflows/nf-neuro/preproc_t1, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (subworkflows/nf-neuro/preproc_t1, scilus-nf-neuro-bigmem-runners) / test - ${{ inputs.paths }}	0s
checks / test (subworkflows/nf-neuro/preproc_dwi) / test - subworkflows/nf-neuro/preproc_dwi	15m 38s
checks / test (subworkflows/nf-neuro/preproc_dwi) / test - subworkflows/nf-neuro/preproc_dwi	15m 38s
checks / test (subworkflows/nf-neuro/preproc_dwi) / test - subworkflows/nf-neuro/preproc_dwi	15m 38s
checks / test (subworkflows/nf-neuro/registration) / test - subworkflows/nf-neuro/registration	17m 50s
checks / test (subworkflows/nf-neuro/registration) / test - subworkflows/nf-neuro/registration	1s
checks / test (subworkflows/nf-neuro/registration) / test - subworkflows/nf-neuro/registration	8m 57s
checks / test (subworkflows/nf-neuro/topup_eddy) / test - subworkflows/nf-neuro/topup_eddy	10m 12s
checks / test (subworkflows/nf-neuro/topup_eddy) / test - subworkflows/nf-neuro/topup_eddy	10m 12s
checks / test (subworkflows/nf-neuro/topup_eddy) / test - subworkflows/nf-neuro/topup_eddy	10m 12s
checks / report	0s
checks / report	1s
checks / report	1s
checks / report	1s
checks / status	1s
checks / status	1s
checks / status	1s
checks / status	1s
checks / lint - modules	1s
checks / lint - subworkflows	1s
checks / test	1s
	5h 41m 11s

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Fix atlas handling and transform file issues in `bundle_seg` #257

Usage

Fix atlas handling and transform file issues in `bundle_seg` #257

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Run time

Fix atlas handling and transform file issues in bundle_seg #257

Usage

Run time

Fix atlas handling and transform file issues in `bundle_seg` #257