#40 - Catch antsBrainExtraction.sh exit error code in stub-run + add stub test #241
gagnonanthonyupdate_pr.yml
on: pull_request
checks
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compute - changes
26s
checks
/
pre-commit
25s
Matrix: checks / test
Matrix: checks / lint - modules
Matrix: checks / lint - subworkflows
checks
/
status
0s
Annotations
14 errors and 11 warnings
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checks / test (modules/nf-neuro/betcrop/antsbet) / test - modules/nf-neuro/betcrop/antsbet
Process returned exit code 128
Launched as "git clone https://github.com/nf-core/setup-nextflow . --config core.autocrlf=false"
Launched at "/home/runner/_work/_actions/Wandalen/setup-nextflow"
-> Stderr
- Cloning into '.'...
- error: RPC failed; HTTP 503 curl 22 The requested URL returned error: 503
- fatal: expected 'packfile'
- '
-< Stderr
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checks / test (modules/nf-neuro/betcrop/antsbet) / test - modules/nf-neuro/betcrop/antsbet
Expects action path `action.yml` or `action.yaml` in the action dir: /home/runner/_work/_actions/Wandalen/setup-nextflow/
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checks / test (modules/nf-neuro/betcrop/antsbet) / test - modules/nf-neuro/betcrop/antsbet
Process completed with exit code 1.
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checks / test (modules/nf-neuro/betcrop/antsbet) / test - modules/nf-neuro/betcrop/antsbet
Process completed with exit code 1.
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checks / test (modules/nf-neuro/betcrop/antsbet) / test - modules/nf-neuro/betcrop/antsbet
Process completed with exit code 1.
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
Process returned exit code 128
Launched as "git clone https://github.com/actions/setup-java . --config core.autocrlf=false"
Launched at "/home/runner/_work/_actions/Wandalen/setup-java"
-> Stderr
- Cloning into '.'...
- error: RPC failed; HTTP 502 curl 22 The requested URL returned error: 502
- fatal: expected 'packfile'
- '
-< Stderr
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
Process returned exit code 128
Launched as "git clone https://github.com/nf-core/setup-nextflow . --config core.autocrlf=false"
Launched at "/home/runner/_work/_actions/Wandalen/setup-nextflow"
-> Stderr
- Cloning into '.'...
- fatal: unable to access 'https://github.com/nf-core/setup-nextflow/': The requested URL returned error: 503
- '
-< Stderr
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
Expects action path `action.yml` or `action.yaml` in the action dir: /home/runner/_work/_actions/Wandalen/setup-nextflow/
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
Expects action path `action.yml` or `action.yaml` in the action dir: /home/runner/_work/_actions/Wandalen/setup-java/
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
Process completed with exit code 1.
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
Process completed with exit code 1.
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
Process completed with exit code 1.
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checks / lint - modules (betcrop/antsbet) / lint - betcrop/antsbet
Process completed with exit code 1.
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checks / status
Process completed with exit code 1.
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checks / editorconfig
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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checks / prettier
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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checks / pre-commit
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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checks / compute - changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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checks / test (modules/nf-neuro/betcrop/antsbet) / test - modules/nf-neuro/betcrop/antsbet
No files were found with the provided path: tests_workdir/. No artifacts will be uploaded.
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checks / test (modules/nf-neuro/betcrop/antsbet) / test - modules/nf-neuro/betcrop/antsbet
No files were found with the provided path: tests_reports/. No artifacts will be uploaded.
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
No files were found with the provided path: tests_reports/. No artifacts will be uploaded.
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checks / test (subworkflows/nf-neuro/preproc_t1) / test - subworkflows/nf-neuro/preproc_t1
No files were found with the provided path: tests_workdir/. No artifacts will be uploaded.
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checks / lint - modules (betcrop/antsbet) / lint - betcrop/antsbet
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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checks / lint - subworkflows (preproc_t1) / lint - preproc_t1
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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checks / status
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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