update #60
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| name: patoloji-hakkinda | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| render: | |
| if: "!contains(github.event.head_commit.message, 'WIP')" | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| env: | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: "actions checkout" | |
| uses: actions/checkout@v3 | |
| - name: "Install curl for Bioconductor" | |
| run: | | |
| sudo apt -y install libcurl4-openssl-dev | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-renv@v2 | |
| - name: Install Pandoc | |
| run: sudo apt-get install pandoc | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install R dependencies | |
| run: | | |
| if (!requireNamespace("remotes", quietly = TRUE)) {install.packages("remotes", dependencies = TRUE, quiet = TRUE, verbose = FALSE)} | |
| remotes::install_deps(dependencies = TRUE) | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv", dependencies = TRUE, quiet = TRUE, verbose = FALSE) | |
| renv::restore() | |
| if (!requireNamespace("fs", quietly = TRUE)) install.packages("fs", dependencies = TRUE, quiet = TRUE, verbose = FALSE) | |
| if (!requireNamespace("quarto", quietly = TRUE)) install.packages("quarto", dependencies = TRUE, quiet = TRUE, verbose = FALSE) | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: "Render patoloji-hakkinda" | |
| shell: Rscript {0} | |
| run: | | |
| filestorender <- list.files(path = '.', pattern = '.md', full.names = TRUE, recursive = TRUE) | |
| render_file <- purrr::safely(function(file) {rmarkdown::render(file, encoding = 'UTF-8', output_dir = './patoloji-hakkinda/')}) | |
| purrr::map(.x = filestorender, .f = render_file) | |
| - name: Commit results to main branch | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add . | |
| git commit -m "CI added changes `date +'%Y-%m-%d %H:%M:%S'`" || echo "No changes to commit" | |
| git push origin || echo "No changes to commit" | |
| - name: Push changes # push the output folder to your repo | |
| uses: ad-m/github-push-action@master | |
| with: | |
| branch: main | |
| github_token: ${{ secrets.API_TOKEN_GITHUB }} | |
| # WORKFLOW_GITHUB_TOKEN | |
| force: true | |
| patoloji-hakkinda: | |
| needs: render | |
| continue-on-error: true | |
| runs-on: ubuntu-latest | |
| container: ubuntu | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Pushes to patoloji-hakkinda | |
| uses: cpina/github-action-push-to-another-repository@main | |
| env: | |
| API_TOKEN_GITHUB: ${{ secrets.API_TOKEN_GITHUB }} | |
| with: | |
| source-directory: './patoloji-hakkinda' | |
| destination-github-username: 'sbalci' | |
| destination-repository-name: 'patoloji-hakkinda' | |
| user-email: [email protected] | |
| target-branch: main | |
| # build: | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Build the site in the jekyll/builder container | |
| # run: | | |
| # docker run \ | |
| # -v ${{ github.workspace }}:/srv/jekyll -v ${{ github.workspace }}/_site:/srv/jekyll/_site \ | |
| # jekyll/builder:latest /bin/bash -c "chmod -R 777 /srv/jekyll && jekyll build --future" | |
| # tweet: | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Get current date | |
| # id: date | |
| # run: echo "::set-output name=date::$(date +'%Y-%m-%d')" | |
| # - uses: ethomson/send-tweet-action@v1 | |
| # with: | |
| # status: (Para)Pathology notes are updated on ${{ steps.date.outputs.date }}. See here https://www.parapathology.com/ and here https://www.patolojinotlari.com/ | |
| # consumer-key: ${{ secrets.API_KEY }} | |
| # consumer-secret: ${{ secrets.API_SECRET_KEY }} | |
| # access-token: ${{ secrets.ACCESS_TOKEN }} | |
| # access-token-secret: ${{ secrets.ACCESS_TOKEN_SECRET }} | |