My notes about R.
- 'Raising Your Code to Professional Standards' was a free article for a journal called 'SDJournal'. It is still available at https://github.com/richelbilderbeek/sdj_raising_your_code_to_professional_standards
- Methods.blog post: The babette R Package: How to Sooth the Phylogenetic BEAST2
- rOpenSci blog post: Call BEAST2 for Bayesian evolutionary analysis from R
- rOpenSci blog post: Selecting the Best Phylogenetic Evolutionary Model
- Bilderbeek (2020) mcbette: model comparison using babette. Journal of Open Source Software 5.54: 2762. https://doi.org/10.21105/joss.02762
- Bilderbeek, Laudanno and Etienne (2020) Quantifying the impact of an inference model in Bayesian phylogenetics. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13514
- Bilderbeek and Etienne (2018) babette: BEAUti 2, BEAST2 and Tracer for R. Methods in Ecology and Evolution 9, no. 9: 2034-2040. https://doi.org/10.1111/2041-210X.13032
Build statuses for my R packages.
- [1] Cannot get 100% code coverage, because one needs to request an (expiring) download URL for this tool
- [2] Cannot get 100% code coverage, because all tests do not fit within one hour yet
- [3] Cannot get 100% code coverage, because installing COBALT is a +750 MB download: I will need to do some trick to test install/uninstall errors 👍
- [4] Cannot get 100% code coverage, due to using untested code from other dev