Update main tests. #19

	name: Build and tests

	on:
	push:
	branches: [ main, master, develop ]
	paths-ignore:
	- '**.md'
	workflow_dispatch:

	jobs:

	########################################################################################
	make:
	name: Make
	strategy:
	fail-fast: false
	matrix:
	machine: [ubuntu-latest]
	gmake_install_command: ['gmake --version']
	compiler: [12]
	include:
	- {machine: macOS-13, gmake_install_command: 'brew install make && gmake --version', compiler: 12}
	runs-on: ['${{ matrix.machine }}']

	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive

	- name: install gmake
	run: ${{ matrix.gmake_install_command }}

	- name: make
	run: \|
	gmake -j CXX=g++-${{matrix.compiler}} CC=gcc-${{matrix.compiler}} STATIC_LINK=true
	- name: tar artifacts
	run: tar -cvf vclust.tar ./vclust.py ./test.py ./example ./bin/kmer-db ./bin/lz-ani ./bin/clusty ./bin/mfasta-tool

	- uses: actions/upload-artifact@v4
	with:
	name: executable-artifact-${{ matrix.machine }}
	path: ./vclust.tar

	########################################################################################
	pipeline:
	name: Pipeline
	needs: make
	strategy:
	fail-fast: false
	matrix:
	machine: [ubuntu-latest, macOS-13]

	runs-on: ['${{ matrix.machine }}']

	steps:
	- uses: actions/download-artifact@v4
	with:
	name: executable-artifact-${{ matrix.machine }}
	path: ./

	- name: set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.x'

	- name: untar artifacts
	run: \|
	tar -xf vclust.tar

	- name: run pipeline
	run: \|
	pip install pytest
	pytest test.py -k 'not test_cluster_algorithm_leiden'

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