Added mode info
for veryfying availability of submodules binaries.
#16
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Build and tests | |
on: | |
push: | |
branches: [ main, master, develop ] | |
paths-ignore: | |
- '**.md' | |
workflow_dispatch: | |
jobs: | |
######################################################################################## | |
make: | |
name: Make | |
strategy: | |
fail-fast: false | |
matrix: | |
machine: [ubuntu-latest, macOS-12] | |
compiler: [12] | |
runs-on: ['${{ matrix.machine }}'] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: recursive | |
- name: make | |
run: | | |
make -j32 CXX=g++-${{matrix.compiler}} CC=gcc-${{matrix.compiler}} | |
- name: tar artifacts | |
run: tar -cvf vclust.tar ./vclust.py ./test.py ./example ./bin/kmer-db ./bin/lz-ani ./bin/clusty ./bin/multi-fasta-split | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: executable-artifact-${{ matrix.machine }} | |
path: ./vclust.tar | |
######################################################################################## | |
pipeline: | |
name: Pipeline | |
needs: make | |
strategy: | |
fail-fast: false | |
matrix: | |
machine: [ubuntu-latest, macOS-12] | |
runs-on: ['${{ matrix.machine }}'] | |
steps: | |
- uses: actions/download-artifact@v4 | |
with: | |
name: executable-artifact-${{ matrix.machine }} | |
path: ./ | |
- name: set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.x' | |
- name: untar artifacts | |
run: | | |
tar -xf vclust.tar | |
- name: run pipeline | |
run: | | |
pip install pytest | |
pytest test.py -k 'not test_cluster_algorithm_leiden' |