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QuaDBio Lab

Quantitative Developmental Biology Lab

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  1. scRNAseq_analysis_vignette scRNAseq_analysis_vignette Public

    Tutorial for scRNA-seq data analysis beginners using R

    166 58

  2. Pando Pando Public

    Multiome GRN inference.

    R 114 21

  3. scMultiome_analysis_vignette scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    49 13

  4. VoxHunt VoxHunt Public

    VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps

    HTML 42 5

  5. primate_cerebral_organoids primate_cerebral_organoids Public

    Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain development" (https://www.nature.com/articles/s41586-019-1654-9)

    R 33 3

  6. simspec simspec Public

    Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

    R 30 3

Repositories

Showing 10 of 23 repositories
  • sopa Public Forked from gustaveroussy/sopa

    Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells

    quadbio/sopa’s past year of commit activity
    Python 0 BSD-3-Clause 20 0 0 Updated Dec 16, 2024
  • amex_merfish_spaceolotl Public
    quadbio/amex_merfish_spaceolotl’s past year of commit activity
    Python 0 0 0 0 Updated Dec 9, 2024
  • analysis_template Public template

    Simple template repo for single-cell/spatial analysis

    quadbio/analysis_template’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Nov 10, 2024
  • RNAseq_tutorial Public
    quadbio/RNAseq_tutorial’s past year of commit activity
    17 8 0 0 Updated Oct 16, 2024
  • morphodynamics_human_brain_organoid Public
    quadbio/morphodynamics_human_brain_organoid’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Sep 13, 2024
  • moscot Public Forked from theislab/moscot

    Multi-omic single-cell optimal transport tools

    quadbio/moscot’s past year of commit activity
    Python 0 BSD-3-Clause 9 0 0 Updated Jul 26, 2024
  • Tangram Public Forked from broadinstitute/Tangram

    Spatial alignment of single cell transcriptomic data.

    quadbio/Tangram’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 52 0 0 Updated Jul 3, 2024
  • scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    quadbio/scMultiome_analysis_vignette’s past year of commit activity
    49 13 5 0 Updated Apr 22, 2024
  • Pando Public

    Multiome GRN inference.

    quadbio/Pando’s past year of commit activity
    R 114 MIT 21 19 2 Updated Apr 19, 2024
  • scRNAseq_analysis_vignette Public

    Tutorial for scRNA-seq data analysis beginners using R

    quadbio/scRNAseq_analysis_vignette’s past year of commit activity
    166 58 2 0 Updated Apr 18, 2024
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