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Pysam now wraps htslib 1.2.1 and samtools version 1.2
Added CRAM file support to pysam
New alignment info interface.
opt() and setTag are deprecated, use get_tag() and set_tag()
instead.
added has_tag()
tags is deprecated, use get_tags() and set_tags() instead.
FastqFile is now FastxFile to reflect that the latter permits
iteration over both fastq- and fasta-formatted files.
A Cython wrapper for htslib VCF/BCF reader/writer. The wrapper
provides a nearly complete Pythonic interface to VCF/BCF metadata
with reading and writing capability. However, the interface is still
incomplete and preliminary and lacks capability to mutate the
resulting data.