Merge Cirrus CI-based release workflow revamp

.cirrus.yml

@@ -0,0 +1,73 @@
+build_wheels_task:
+  only_if: $CIRRUS_BRANCH =~ "release/.*" || $CIRRUS_TAG =~ "v0\..*"
+
+  matrix:
+    - compute_engine_instance:
+        image_project: cirrus-images
+        image: family/docker-builder-arm64
+        architecture: arm64
+        platform: linux
+      matrix:
+        - name: Build ARM Linux py3.6-9 wheels
+          env:
+            CIBW_BUILD: "cp36-* cp37-* cp38-* cp39-*"
+        - name: Build ARM Linux py3.10-12 wheels
+          env:
+            CIBW_BUILD: "cp310-* cp311-* cp312-*"
+
+    - name: Build ARM macOS wheels
+      macos_instance:
+        image: ghcr.io/cirruslabs/macos-ventura-base:latest
+      env:
+        CIBW_BUILD: "cp39-* cp310-* cp311-* cp312-*"
+
+  alias: build_wheels
+
+  env:
+    CIRRUS_CLONE_DEPTH: 1
+
+    CIBW_SKIP: "*-musllinux_*"
+    CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28
+
+  install_script: |
+    python3 -m pip install cibuildwheel==2.16.2
+
+  build_script: |
+    cibuildwheel
+
+  wheels_artifacts:
+    path: wheelhouse/*.whl
+
+upload_pypi_task:
+  only_if: $CIRRUS_BRANCH =~ "release/.*" || $CIRRUS_TAG =~ "v0\..*"
+  depends_on: build_wheels
+
+  name: Publish ARM wheels
+
+  container:
+    image: python:latest
+
+  env:
+    CIRRUS_CLONE_DEPTH: 1
+    API_BASEURL: https://api.cirrus-ci.com/v1
+    TWINE_USERNAME: __token__
+
+  install_script: |
+    python3 -m pip install twine
+
+  get_artifacts_script: |
+    curl -sSLO $API_BASEURL/artifact/build/$CIRRUS_BUILD_ID/wheels.zip
+    unzip -q wheels.zip
+
+  upload_script: |
+    case "$CIRRUS_TAG" in
+    v0.*)
+        export TWINE_REPOSITORY=pypi TWINE_PASSWORD=$PYPI_TOKEN ;;
+    *)
+        export TWINE_REPOSITORY=testpypi TWINE_PASSWORD=$TESTPYPI_TOKEN ;;
+    esac
+
+    echo Uploading wheels to $TWINE_REPOSITORY...
+
+    python3 -m twine check wheelhouse/*.whl
+    python3 -m twine upload --disable-progress-bar wheelhouse/*.whl

.github/workflows/release.yaml

@@ -15,14 +15,11 @@ jobs:
     runs-on: ${{ matrix.os }}-latest
     strategy:
       matrix:
-        os: [ubuntu]
-        build: ["cp36-* cp37-*", "cp38-* cp39-*", "cp310-* cp311-*", "cp312-*"]
+        os: [ubuntu, macos]
+        build: ["cp36-* cp37-* cp38-* cp39-*", "cp310-* cp311-* cp312-*"]
         x64image: [manylinux_2_28]
 
         include:
-          - os: macos
-            build: "cp36-* cp37-* cp38-* cp39-* cp310-* cp311-* cp312-*"
-
           - os: ubuntu
             build: "cp38-manylinux_x86_64"
             x64image: manylinux2014
@@ -31,31 +28,23 @@ jobs:
       - name: Checkout pysam
         uses: actions/checkout@v3
 
-      - name: Set up QEMU
-        if:   runner.os == 'Linux'
-        uses: docker/setup-qemu-action@v2
-        with:
-          platforms: arm64
-
       - name: Build wheels
-        uses: pypa/[email protected].1
+        uses: pypa/[email protected].2
         env:
           CIBW_BUILD: ${{ matrix.build }}
           CIBW_SKIP: "*musllinux*"
 
-          CIBW_ARCHS_LINUX: auto aarch64
-          CIBW_ARCHS_MACOS: x86_64 arm64
+          CIBW_ARCHS_LINUX: x86_64
+          CIBW_ARCHS_MACOS: x86_64
 
           CIBW_MANYLINUX_X86_64_IMAGE:  ${{ matrix.x64image }}
           CIBW_MANYLINUX_I686_IMAGE:    manylinux2014
           CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28
 
-          CIBW_TEST_SKIP: "*-*linux_i686 *-*linux_aarch64 *-macosx_arm64"
-
       - name: Upload artifacts
         uses: actions/upload-artifact@v3
         with:
-          path: ./wheelhouse/*.whl
+          path: wheelhouse/*.whl
 
   build_sdist:
     runs-on: ${{ matrix.os }}-latest

pyproject.toml

@@ -14,7 +14,7 @@ dynamic = [
 ]
 
 [project.urls]
-"Documentation" = "https://pysam.readthedocs.io/en/stable/"
+"Documentation" = "https://pysam.readthedocs.io/"
 "Release notes" = "https://pysam.readthedocs.io/en/stable/release.html"
 
 [build-system]
@@ -23,6 +23,8 @@ build-backend = "setuptools.build_meta:__legacy__"
 
 [tool.cibuildwheel]
 before-all = "{project}/devtools/install-prerequisites.sh"
+# Necessary until we build libhts.a out-of-tree from within build_temp
+before-build = "make -C {project}/htslib distclean"
 
 test-requires = ["pytest"]
 test-command = "REF_PATH=: pytest {project}/tests"