Merge pull request #1062 from pysam-developers/v0.18.x

V0.18.x
pysam-developers · Nov 16, 2021 · cb05dd4 · cb05dd4
2 parents b6dffd3 + 5c10315
commit cb05dd4
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Showing 3 changed files with 23 additions and 9 deletions.
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
@@ -16,7 +16,11 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-20.04, macos-10.15]  # windows-2019,
+        os: [ubuntu-latest, macos-10.15]  # windows-2019,
+        cibw_archs: ["auto"]
+        # include:
+        #   - os: ubuntu-latest
+        #     cibw_archs: "aarch64"
 
     steps:
       - name: Checkout pysam
@@ -34,19 +38,20 @@ jobs:
 
       - name: Build wheels for linux
         if:   runner.os == 'Linux'
-        uses: pypa/cibuildwheel@v2.1.2
+        uses: pypa/cibuildwheel@v2.2.2
         env:
-          CIBW_BUILD: cp36-* cp37-* cp38-* cp39-*
+          CIBW_BUILD: cp36-* cp37-* cp38-* cp39-* cp310-*
+          CIBW_SKIP: "*musllinux*"
           CIBW_BEFORE_BUILD: yum install -y libcurl-devel zlib-devel bzip2-devel xz-devel && pip install cython
-          CIBW_MANYLINUX_X86_64_IMAGE: manylinux1
-          CIBW_MANYLINUX_I686_IMAGE: manylinux1
+          CIBW_ARCHS: ${{ matrix.cibw_archs }}
 
       - name: Build wheels for macos
         if:   runner.os != 'Linux'
-        uses: pypa/cibuildwheel@v2.1.2
+        uses: pypa/cibuildwheel@v2.2.2
         env:
-          CIBW_BUILD: cp36-* cp37-* cp38-* cp39-*
+          CIBW_BUILD: cp36-* cp37-* cp38-* cp39-* cp310-*
           CIBW_BEFORE_BUILD: pip install cython
+          CIBW_ARCHS: ${{ matrix.cibw_archs }}
 
       - name: Upload artifacts
         uses: actions/upload-artifact@v2
@@ -110,6 +115,5 @@ jobs:
         if: github.event_name == 'release' && github.event.action == 'published'
         uses: pypa/gh-action-pypi-publish@master
         with:
-          user: __token__
           password: ${{ secrets.PYPI_API_TOKEN }}
 
diff --git a/doc/release.rst b/doc/release.rst
@@ -2,6 +2,16 @@
 Release notes
 =============
 
+Release 0.18.0
+==============
+
+This release wraps htslib/samtools/bcftools version 1.14.
+
+* [#1048] and [#1060], clarify documentation of index statistics with CRAM files
+* Prevent "retval may be used uninitialised" warning.
+* Add new "samples" subcommand to pysam/samtools.py
+* Introduce TupleProxyIterator iterator object class
+
 Release 0.17.0
 ==============
 

diff --git a/pysam/version.py b/pysam/version.py
@@ -1,5 +1,5 @@
 # pysam versioning information
-__version__ = "0.17.0"
+__version__ = "0.18.0"
 
 __samtools_version__ = "1.14"
 __bcftools_version__ = "1.14"