Merge pull request #224 from knaaptime/testing

update testing

.github/workflows/unittests.yml

@@ -1,60 +1,77 @@
- name: Unit Tests
+ name: Tests
+
  on:
    push:
-     branches:
-     - '*'
+     branches: [main]
    pull_request:
      branches:
      - '*'
    schedule:
-     - cron: '59 23 * * *'
+     - cron: "0 0 * * 1,4"
+   workflow_dispatch:
+     inputs:
+       version:
+         description: Manual Unittest Run
+         default: test
+         required: false
 
  jobs:
-   unittests:
-     name: CI (${{ matrix.os }}-${{ matrix.environment-file }})
+   Tests:
+     name: ${{ matrix.os }}, ${{ matrix.environment-file }}
      runs-on: ${{ matrix.os }}
-     continue-on-error: false
-     timeout-minutes: 45
      strategy:
+       fail-fast: false
        matrix:
-         os: [ubuntu-latest, macos-latest, windows-latest]
-         environment-file: [.ci/39.yml, .ci/310.yml, .ci/311.yml]
-         experimental: [false]
-         fail-fast: [false]
-
+         os: [ubuntu-latest]
+         environment-file:
+           - ci/310.yml
+           - ci/311.yml
+           - ci/312.yml
+         include:
+           - environment-file: ci/311.yml
+             os: macos-latest
+           - environment-file: ci/311.yml
+             os: macos-14  # Apple Silicon
+           - environment-file: ci/311.yml
+             os: windows-latest
+     defaults:
+       run:
+         shell: bash -l {0}
+
      steps:
-       - name: checkout repo
-         uses: actions/checkout@v2
-
+       - uses: actions/checkout@v4
+
        - name: setup micromamba
-         uses: mamba-org/provision-with-micromamba@main
+         uses: mamba-org/setup-micromamba@v1
          with:
            environment-file: ${{ matrix.environment-file }}
            micromamba-version: 'latest'
-
-       - name: reinstall segregation - bash
-         shell: bash -l {0}
-         run: pip install -e . --no-deps --force-reinstall
-         if: matrix.os != 'windows-latest'
-
-       - name: reinstall segregation - powershell
-         shell: powershell
-         run: pip install -e . --no-deps --force-reinstall
-         if: matrix.os == 'windows-latest'
-
-       - name: run pytest - bash
-         shell: bash -l {0}
-         run: pytest -v segregation --cov=segregation --cov-report=xml
-         if: matrix.os != 'windows-latest'
-
-       - name: run pytest - powershell
-         shell: powershell
-         run: pytest -v segregation --cov=segregation --cov-report=xml
-         if: matrix.os == 'windows-latest'
-
+
+       - name: Test segregation
+         run: |
+           pytest \
+           segregation \
+           -v \
+           -r a \
+           --color yes \
+           --cov segregation \
+           --cov-append \
+           --cov-report term-missing \
+           --cov-report xml \
+
        - name: codecov
-         uses: codecov/codecov-action@v1
+         uses: codecov/codecov-action@v4
          with:
            token: ${{ secrets.CODECOV_TOKEN }}
            file: ./coverage.xml
            name: segregation-codecov
+
+       - name: Generate and publish the report
+         if: |
+           failure()
+           && steps.status.outcome == 'failure'
+           && github.event_name == 'schedule'
+           && github.repository_owner == 'pysal'
+         uses: xarray-contrib/issue-from-pytest-log@v1
+         with:
+           log-path: pytest-log.jsonl

.ci/39.yml → ci/312.yml

@@ -2,7 +2,7 @@ name: test
 channels:
   - conda-forge
 dependencies:
-  - python=3.9
+  - python=3.12
   - deprecation
   - geopandas>=0.9
   - joblib
@@ -41,4 +41,4 @@ dependencies:
   - sphinxcontrib-bibtex
   - sphinx_bootstrap_theme
   - watermark
-  - black
+  - black