Postcoordination table (#52)

protegeproject · Aug 30, 2024 · 7baf800 · 7baf800
1 parent 6534894
commit 7baf800
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Showing 22 changed files with 871 additions and 10 deletions.
diff --git a/...c/main/java/edu/stanford/bmir/protege/web/client/form/complexcheckbox/CheckBoxConfig.java b/...c/main/java/edu/stanford/bmir/protege/web/client/form/complexcheckbox/CheckBoxConfig.java
@@ -18,7 +18,7 @@ protected CheckBoxConfig(CheckboxValue defaultValue, List<CheckboxValue> scrolla
         this.readOnly = true;
     }
 
-    CheckboxValue getNextValue(CheckboxValue checkboxValue) {
+    public CheckboxValue getNextValue(CheckboxValue checkboxValue) {
         int pos = scrollableValues.indexOf(checkboxValue);
         if(pos >= 0) {
             if(pos == scrollableValues.size() - 1) {

diff --git a/.../stanford/bmir/protege/web/client/form/complexcheckbox/ConfigurableCheckBoxPresenter.java b/.../stanford/bmir/protege/web/client/form/complexcheckbox/ConfigurableCheckBoxPresenter.java
@@ -19,11 +19,11 @@
 import static com.google.common.base.Preconditions.checkNotNull;
 
 public class ConfigurableCheckBoxPresenter implements HasValue<CheckboxValue>, HasText, HasEnabled, HasReadOnly {
-    Logger logger = java.util.logging.Logger.getLogger("ConfigurableCheckBoxPresenter");
-
     @Nonnull
     private final ConfigurableCheckBoxView view;
 
+    private boolean isTouched = false;
+
     private CheckBoxConfig config;
 
     @Inject
@@ -58,6 +58,7 @@ private void toggleSelected() {
         }
         CheckboxValue nextSel = config.getNextValue(view.getValue());
         view.setValue(nextSel);
+        isTouched = true;
     }
 
     @Override
@@ -89,6 +90,10 @@ public HandlerRegistration addValueChangeHandler(ValueChangeHandler<CheckboxValu
         return view.addValueChangeHandler(handler);
     }
 
+    public boolean isTouched() {
+        return isTouched;
+    }
+
     @Override
     public void fireEvent(GwtEvent<?> event) {
         view.fireEvent(event);

diff --git a/.../java/edu/stanford/bmir/protege/web/client/form/complexcheckbox/ConfigurableCheckbox.java b/.../java/edu/stanford/bmir/protege/web/client/form/complexcheckbox/ConfigurableCheckbox.java
@@ -16,6 +16,7 @@ public class ConfigurableCheckbox implements IsWidget, HasValue<CheckboxValue>,
     @Nonnull
     private final ConfigurableCheckBoxPresenter presenter;
 
+
     private final CheckBoxConfig checkBoxConfig;
 
     public ConfigurableCheckbox(CheckBoxConfig checkBoxConfig, String initialValue) {
@@ -35,6 +36,10 @@ public ConfigurableCheckbox(CheckBoxConfig checkBoxConfig, String initialValue)
         this.setValue(checkboxValue);
     }
 
+    public boolean isTouched() {
+        return this.presenter.isTouched();
+    }
+
     @Override
     public Widget asWidget() {
         return container;

diff --git a/...nt/src/main/java/edu/stanford/bmir/protege/web/client/inject/ClientApplicationModule.java b/...nt/src/main/java/edu/stanford/bmir/protege/web/client/inject/ClientApplicationModule.java
@@ -94,6 +94,8 @@
 import edu.stanford.bmir.protege.web.client.portlet.PortletChooserViewImpl;
 import edu.stanford.bmir.protege.web.client.portlet.PortletUi;
 import edu.stanford.bmir.protege.web.client.portlet.PortletUiImpl;
+import edu.stanford.bmir.protege.web.client.postcoordination.PostCoordinationPortletView;
+import edu.stanford.bmir.protege.web.client.postcoordination.PostCoordinationPortletViewImpl;
 import edu.stanford.bmir.protege.web.client.primitive.PrimitiveDataEditorImageView;
 import edu.stanford.bmir.protege.web.client.primitive.PrimitiveDataEditorImageViewImpl;
 import edu.stanford.bmir.protege.web.client.progress.BusyView;
@@ -504,6 +506,11 @@ LinearizationPortletView provideLinearizationPortletView(LinearizationPortletVie
         return impl;
     }
 
+    @Provides
+    PostCoordinationPortletView providePostCoordinationPortletView(PostCoordinationPortletViewImpl impl){
+        return impl;
+    }
+
     @Provides
     LinearizationCommentsView provideLienarizationCommentsView(LinearizationCommentsViewImpl impl){
         return impl;

diff --git a/...java/edu/stanford/bmir/protege/web/client/linearization/LinearizationPortletViewImpl.java b/...java/edu/stanford/bmir/protege/web/client/linearization/LinearizationPortletViewImpl.java
@@ -279,11 +279,11 @@ private void addCommentsHeader(String headerText, int column) {
 
     private void initializeTableHeader() {
         addHeaderCell("Linearization",  0);
-        addCheckboxHeaderCell("Is part of?",  1);
-        addCheckboxHeaderCell("Is grouping?",2);
-        addCheckboxHeaderCell("Aux.ax.child?", 3);
-        addWideHeaderCell("Linearization parent", 4);
-        addCommentsHeader("Coding notes", 5);
+        addCheckboxHeaderCell("Is Part Of?",  1);
+        addCheckboxHeaderCell("Is Grouping?",2);
+        addCheckboxHeaderCell("Aux.Ax.Child?", 3);
+        addWideHeaderCell("Linearization Path Parent", 4);
+        addCommentsHeader("Coding Notes", 5);
         flexTable.getRowFormatter().addStyleName(0, style.getLinearizationHeader());
     }
 

diff --git a/...edu/stanford/bmir/protege/web/client/postcoordination/PostCoordinationCheckboxConfig.java b/...edu/stanford/bmir/protege/web/client/postcoordination/PostCoordinationCheckboxConfig.java
@@ -0,0 +1,89 @@
+package edu.stanford.bmir.protege.web.client.postcoordination;
+
+import edu.stanford.bmir.protege.web.client.form.complexcheckbox.CheckBoxConfig;
+import edu.stanford.bmir.protege.web.client.form.complexcheckbox.CheckboxValue;
+
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
+import java.util.logging.Logger;
+
+public class PostCoordinationCheckboxConfig extends CheckBoxConfig {
+    private final Logger logger = Logger.getLogger("CheckBoxConfig");
+
+    private final static String CHECK_SVG = "<svg viewBox=\"0 0 24 24\" fill=\"none\" xmlns=\"http://www.w3.org/2000/svg\" stroke=\"#2cd900\"><g id=\"SVGRepo_bgCarrier\" stroke-width=\"0\"></g><g id=\"SVGRepo_tracerCarrier\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></g><g id=\"SVGRepo_iconCarrier\"> <path d=\"M4 12.6111L8.92308 17.5L20 6.5\" stroke=\"#2cd900\" stroke-width=\"2.4\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></path> </g></svg>";
+    private final static String REQUIRED_SVG = "<svg viewBox=\"0 0 512 512\" version=\"1.1\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" fill=\"#000000\"><g id=\"SVGRepo_bgCarrier\" stroke-width=\"0\"></g><g id=\"SVGRepo_tracerCarrier\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></g><g id=\"SVGRepo_iconCarrier\"> <title>mandatory-done</title> <g id=\"Page-1\" stroke=\"none\" stroke-width=\"1\" fill=\"none\" fill-rule=\"evenodd\"> <g id=\"icon\" fill=\"#c23f42\" transform=\"translate(114.773333, 42.666667)\"> <path d=\"M322.588167,146.773333 L367.843001,192.028167 L130.588167,429.283001 L-2.61257984e-15,298.694834 L45.254834,253.44 L130.588167,338.780167 L322.588167,146.773333 Z M169.347879,7.10542736e-15 L159.927965,83.3939394 L236.94961,49.3160173 L253.850043,103.619048 L172.672554,119.411255 L226.975584,180.08658 L180.707186,213.333333 L141.088139,141.298701 L101.746147,213.333333 L55.2006926,180.08658 L109.503723,119.411255 L28.60329,103.619048 L45.2266667,49.3160173 L122.248312,83.3939394 L112.828398,7.10542736e-15 L169.347879,7.10542736e-15 Z\" id=\"Combined-Shape\"> </path> </g> </g> </g></svg>";
+
+    private final static String UNKNOWN_SVG = "<svg version=\"1.1\" id=\"Capa_1\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" viewBox=\"0 0 290.658 290.658\" xml:space=\"preserve\" fill=\"#000000\"><g id=\"SVGRepo_bgCarrier\" stroke-width=\"0\"></g><g id=\"SVGRepo_tracerCarrier\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></g><g id=\"SVGRepo_iconCarrier\"> <g> <g> <rect y=\"139.474\" style=\"fill:darkgrey;\" width=\"290.658\" height=\"11.711\"></rect> </g> </g> </g></svg>";
+
+    private final static String DEFAULT_CHECK_SVG = "<svg viewBox=\"0 0 24 24\" fill=\"none\" xmlns=\"http://www.w3.org/2000/svg\"><g id=\"SVGRepo_bgCarrier\" stroke-width=\"0\"></g><g id=\"SVGRepo_tracerCarrier\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></g><g id=\"SVGRepo_iconCarrier\"> <path d=\"M4 12.6111L8.92308 17.5L20 6.5\" stroke=\"#919191\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></path> </g></svg>";
+    private final static String DEFAULT_REQUIRED_SVG = "<svg viewBox=\"0 0 512 512\" version=\"1.1\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" fill=\"#000000\"><g id=\"SVGRepo_bgCarrier\" stroke-width=\"0\"></g><g id=\"SVGRepo_tracerCarrier\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></g><g id=\"SVGRepo_iconCarrier\"> <title>mandatory-done</title> <g id=\"Page-1\" stroke=\"none\" stroke-width=\"1\" fill=\"none\" fill-rule=\"evenodd\"> <g id=\"icon\" fill=\"#919191\" transform=\"translate(114.773333, 42.666667)\"> <path d=\"M322.588167,146.773333 L367.843001,192.028167 L130.588167,429.283001 L-2.61257984e-15,298.694834 L45.254834,253.44 L130.588167,338.780167 L322.588167,146.773333 Z M169.347879,7.10542736e-15 L159.927965,83.3939394 L236.94961,49.3160173 L253.850043,103.619048 L172.672554,119.411255 L226.975584,180.08658 L180.707186,213.333333 L141.088139,141.298701 L101.746147,213.333333 L55.2006926,180.08658 L109.503723,119.411255 L28.60329,103.619048 L45.2266667,49.3160173 L122.248312,83.3939394 L112.828398,7.10542736e-15 L169.347879,7.10542736e-15 Z\" id=\"Combined-Shape\"> </path> </g> </g> </g></svg>";
+
+    private final static String DEFAULT_UNKNOWN_SVG = "<svg version=\"1.1\" id=\"Capa_1\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" viewBox=\"0 0 290.658 290.658\" xml:space=\"preserve\" fill=\"#000000\"><g id=\"SVGRepo_bgCarrier\" stroke-width=\"0\"></g><g id=\"SVGRepo_tracerCarrier\" stroke-linecap=\"round\" stroke-linejoin=\"round\"></g><g id=\"SVGRepo_iconCarrier\"> <g> <g> <rect y=\"139.474\" style=\"fill:darkgrey;\" width=\"290.658\" height=\"11.711\"></rect> </g> </g> </g></svg>";
+
+
+    private CheckboxValue parentValue;
+
+
+    public static List<CheckboxValue> AVAILABLE_VALUES_LIST = Arrays.asList(new CheckboxValue(UNKNOWN_SVG, "UNKNOWN"),
+            new CheckboxValue(CHECK_SVG, "ALLOWED"),
+            new CheckboxValue(REQUIRED_SVG, "REQUIRED")
+            );
+
+    public static List<CheckboxValue> AVAILABLE_DEFAULT_VALUE_LIST = Arrays.asList(
+            new CheckboxValue(DEFAULT_UNKNOWN_SVG, "DEFAULT_UNKNOWN"),
+            new CheckboxValue(DEFAULT_CHECK_SVG, "DEFAULT_ALLOWED"),
+            new CheckboxValue(DEFAULT_REQUIRED_SVG, "DEFAULT_REQUIRED"));
+
+    protected PostCoordinationCheckboxConfig() {
+        super(new CheckboxValue(UNKNOWN_SVG, "UNKNOWN"), AVAILABLE_VALUES_LIST);
+    }
+
+    @Override
+    public CheckboxValue getNextValue(CheckboxValue checkboxValue) {
+        if(parentValue != null) {
+            return getNextValueForDerivedClasses(checkboxValue);
+        } else {
+            return super.getNextValue(checkboxValue);
+        }
+    }
+
+    @Override
+    public CheckboxValue findValue(String inputValue) {
+        if(inputValue == null || inputValue.isEmpty()) {
+            return new CheckboxValue(UNKNOWN_SVG, "UNKNOWN");
+        }
+        List<CheckboxValue> allValues = new ArrayList<>();
+        allValues.addAll(AVAILABLE_VALUES_LIST);
+        allValues.addAll(AVAILABLE_DEFAULT_VALUE_LIST);
+
+        return allValues.stream().filter(value -> value.getValue().equalsIgnoreCase(inputValue))
+                .findFirst()
+                .orElse(new CheckboxValue(UNKNOWN_SVG, "UNKNOWN"));
+    }
+
+    private CheckboxValue getNextValueForDerivedClasses(CheckboxValue checkboxValue) {
+        if(checkboxValue.getValue().startsWith("DEFAULT")) {
+            return AVAILABLE_VALUES_LIST.get(0);
+        }
+
+        int pos = AVAILABLE_VALUES_LIST.indexOf(checkboxValue);
+        if(pos >= 0) {
+            if (pos == AVAILABLE_VALUES_LIST.size()-1) {
+                return AVAILABLE_DEFAULT_VALUE_LIST.stream().filter(value -> ("DEFAULT_"+parentValue.getValue()).equalsIgnoreCase(value.getValue()))
+                        .findFirst()
+                        .orElseThrow(() -> new RuntimeException("Missing parent"));
+            } else {
+                return AVAILABLE_VALUES_LIST.get(pos + 1);
+
+            }
+        }else {
+            throw new RuntimeException("Given value " + checkboxValue + " is not in scrollable values ");
+        }
+    }
+
+    public void setParentValue(CheckboxValue parentValue) {
+        this.parentValue = parentValue;
+    }
+
+}
diff --git a/...u/stanford/bmir/protege/web/client/postcoordination/PostCoordinationPortletPresenter.java b/...u/stanford/bmir/protege/web/client/postcoordination/PostCoordinationPortletPresenter.java
@@ -0,0 +1,107 @@
+package edu.stanford.bmir.protege.web.client.postcoordination;
+
+import com.google.web.bindery.event.shared.EventBus;
+import edu.stanford.bmir.protege.web.client.dispatch.DispatchServiceManager;
+import edu.stanford.bmir.protege.web.client.lang.DisplayNameRenderer;
+import edu.stanford.bmir.protege.web.client.library.msgbox.MessageBox;
+import edu.stanford.bmir.protege.web.client.portlet.AbstractWebProtegePortletPresenter;
+import edu.stanford.bmir.protege.web.client.portlet.PortletUi;
+import edu.stanford.bmir.protege.web.client.selection.SelectionModel;
+import edu.stanford.bmir.protege.web.client.user.LoggedInUserManager;
+import edu.stanford.bmir.protege.web.shared.event.WebProtegeEventBus;
+import edu.stanford.bmir.protege.web.shared.linearization.GetLinearizationDefinitionsAction;
+import edu.stanford.bmir.protege.web.shared.linearization.LinearizationDefinition;
+import edu.stanford.bmir.protege.web.shared.postcoordination.GetPostCoordinationTableConfigurationAction;
+import edu.stanford.bmir.protege.web.shared.postcoordination.PostCoordinationTableAxisLabel;
+import edu.stanford.bmir.protege.web.shared.project.ProjectId;
+import edu.stanford.webprotege.shared.annotations.Portlet;
+import org.semanticweb.owlapi.model.OWLEntity;
+
+import javax.annotation.Nonnull;
+import javax.inject.Inject;
+import java.util.HashMap;
+import java.util.Map;
+import java.util.Optional;
+import java.util.logging.Logger;
+
+
+@Portlet(id = "portlets.PostCoordination",
+        title = "iCat-X Post-Coordinations",
+        tooltip = "Displays the Post-Coordination configuration on the current entity.")
+public class PostCoordinationPortletPresenter extends AbstractWebProtegePortletPresenter  {
+
+        private final PostCoordinationPortletView view;
+        Logger logger = java.util.logging.Logger.getLogger("PostCoordinationPortletPresenter");
+
+        private DispatchServiceManager dispatch;
+        private final EventBus eventBus;
+
+        private final LoggedInUserManager loggedInUserManager;
+
+
+        private MessageBox messageBox;
+
+        @Inject
+        public PostCoordinationPortletPresenter(@Nonnull SelectionModel selectionModel,
+                                                @Nonnull ProjectId projectId,
+                                                @Nonnull DisplayNameRenderer displayNameRenderer,
+                                                @Nonnull DispatchServiceManager dispatch,
+                                                @Nonnull PostCoordinationPortletView view,
+                                                @Nonnull EventBus eventBus,
+                                                @Nonnull MessageBox messageBox,
+                                                @Nonnull LoggedInUserManager loggedInUserManager) {
+            super(selectionModel, projectId, displayNameRenderer, dispatch);
+            this.view = view;
+            this.messageBox = messageBox;
+            this.dispatch = dispatch;
+            this.eventBus = eventBus;
+            this.loggedInUserManager = loggedInUserManager;
+            this.view.setProjectId(projectId);
+
+        }
+
+        @Override
+        public void startPortlet(PortletUi portletUi, WebProtegeEventBus eventBus) {
+
+            portletUi.setWidget(view.asWidget());
+            setDisplaySelectedEntityNameAsSubtitle(true);
+
+            dispatch.execute(GetPostCoordinationTableConfigurationAction.create("ICD"), result -> {
+                Map<String, PostCoordinationTableAxisLabel> labels = new HashMap<>();
+                for(String availableAxis : result.getTableConfiguration().getPostCoordinationAxes()) {
+                    PostCoordinationTableAxisLabel existingLabel = result.getLabels().stream()
+                            .filter(label -> label.getPostCoordinationAxis().equalsIgnoreCase(availableAxis))
+                            .findFirst().orElseThrow( () -> new RuntimeException("Couldn't find label for " + availableAxis));
+                    labels.put(availableAxis, existingLabel);
+                }
+                view.setLabels(labels);
+
+                dispatch.execute(GetLinearizationDefinitionsAction.create(), definitionsResult -> {
+                    Map<String, LinearizationDefinition> definitionMap = new HashMap<>();
+
+                    for (LinearizationDefinition definition : definitionsResult.getDefinitionList()) {
+                        definitionMap.put(definition.getWhoficEntityIri(), definition);
+                    }
+                    view.setLinearizationDefinitonMap(definitionMap);
+                    view.setPostCoordinationEntity();
+                });
+
+            });
+
+
+        }
+
+
+
+        @Override
+        protected void handleReloadRequest() {
+
+        }
+
+        @Override
+        protected void handleAfterSetEntity(Optional<OWLEntity> entityData) {
+
+
+        }
+
+}
diff --git a/...va/edu/stanford/bmir/protege/web/client/postcoordination/PostCoordinationPortletView.java b/...va/edu/stanford/bmir/protege/web/client/postcoordination/PostCoordinationPortletView.java
@@ -0,0 +1,20 @@
+package edu.stanford.bmir.protege.web.client.postcoordination;
+
+import com.google.gwt.user.client.ui.AcceptsOneWidget;
+import com.google.gwt.user.client.ui.IsWidget;
+import edu.stanford.bmir.protege.web.shared.HasDispose;
+import edu.stanford.bmir.protege.web.shared.linearization.LinearizationDefinition;
+import edu.stanford.bmir.protege.web.shared.postcoordination.PostCoordinationTableAxisLabel;
+import edu.stanford.bmir.protege.web.shared.project.ProjectId;
+
+import java.util.Map;
+
+public interface PostCoordinationPortletView extends AcceptsOneWidget, IsWidget, HasDispose {
+    void setProjectId(ProjectId projectId);
+
+    void setLabels(Map<String, PostCoordinationTableAxisLabel> labels);
+
+    void setLinearizationDefinitonMap(Map<String, LinearizationDefinition> linearizationDefinitonMap);
+
+    void setPostCoordinationEntity();
+}