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crd: separate dictionary block addition from prepare_refmac_crd #1047

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Run time

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Job	Run time
macOS 14	3m 15s
CentOS 7	6m 12s
macOS 11 (w/o python)	3m 33s
Ubuntu 20.04	7m 29s
Ubuntu 20.04 with Clang 6.0	6m 19s
Ubuntu 22.04	3m 46s
Windows 2022	6m 54s
	37m 28s