change the test that was failing (#291) #1009
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name: CI | |
on: [push, pull_request] | |
jobs: | |
macos12: | |
name: "macOS 12" | |
runs-on: macos-12 | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
env: | |
SKBUILD_CMAKE_ARGS: "-DEXTRA_WARNINGS=ON" | |
SKBUILD_CMAKE_TARGETS: "all;check" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Build wheel and install | |
run: | | |
python3 -m pip install wheel | |
python3 -m pip wheel -v . | |
python3 -m pip install gemmi-*.whl | |
- name: Python Tests | |
run: | | |
python3 -m unittest discover -v -s tests/ | |
python3 -m pip install sphinx | |
cd docs | |
sphinx-build -M doctest . _build -n -E | |
- uses: actions/upload-artifact@v3 | |
with: | |
name: gemmi-macos12 | |
path: | | |
./gemmi-*.whl | |
retention-days: 14 | |
macos11: | |
name: "macOS 11 (w/o python)" | |
runs-on: macos-11 | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: mkdir build | |
run: cmake -E make_directory ${{runner.workspace}}/build | |
- name: CMake Build | |
working-directory: ${{runner.workspace}}/build | |
shell: bash | |
run: | | |
cmake --version | |
cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=MinSizeRel -DBUILD_SHARED_LIBS=OFF | |
cmake --build . -j3 | |
cmake --build . --target check -j3 | |
- name: Install | |
working-directory: ${{runner.workspace}}/build | |
shell: bash | |
run: sudo cmake --install . | |
- name: Test | |
run: | | |
ctest --output-on-failure | |
python3 tests/test_prog.py | |
- uses: actions/upload-artifact@v3 | |
with: | |
name: gemmi-macos11 | |
path: | | |
${{runner.workspace}}/build/gemmi | |
${{runner.workspace}}/build/libgemmi* | |
retention-days: 14 | |
windows2022: | |
name: "Windows 2022" | |
runs-on: windows-2022 | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- name: build and test | |
run: | | |
python -m pip install -v . | |
python -m pip install numpy | |
python -m unittest discover -v -s tests/ | |
- name: run doctest | |
working-directory: ./docs | |
run: | | |
python -m pip install sphinx | |
sphinx-build -M doctest . _build -n -E | |
ubuntu2204: | |
name: "Ubuntu 22.04" | |
runs-on: ubuntu-22.04 | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: apt-get | |
run: | | |
sudo apt-get update | |
sudo apt-get install libz-dev python3-pip g++ gfortran python3-numpy | |
- name: install pybind11 | |
run: | | |
git clone --depth=1 https://github.com/pybind/pybind11.git | |
#cd pybind11 | |
#cmake . -Wno-dev -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPYBIND11_TEST=OFF | |
#make | |
#sudo make install | |
- name: build and test | |
run: | | |
g++ --version | |
cmake --version | |
mkdir build | |
cd build | |
cmake .. -DCMAKE_BUILD_TYPE=MinSizeRel -DUSE_FORTRAN=1 -DEXTRA_WARNINGS=1 -DUSE_PYTHON=1 -DPython_EXECUTABLE=/usr/bin/python3 -DBUILD_SHARED_LIBS=ON -DCMAKE_CXX_VISIBILITY_PRESET=hidden | |
make -j2 | |
make -j2 check | |
sudo make install | |
python3 -m unittest discover -v -s ../tests/ | |
strip --strip-unneeded ./gemmi ./gemmi.cpython*.so | |
- name: run doctest | |
run: | | |
sudo python3 -m pip install -U sphinx | |
export PYTHONPATH=$PWD/build | |
cd docs | |
sphinx-build -M doctest . _build -n -E | |
ubuntu2004: | |
name: "Ubuntu 20.04" | |
runs-on: ubuntu-20.04 | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: apt-get | |
run: | | |
sudo apt-get update | |
sudo apt-get install libz-dev python3-pip g++ gfortran python3-numpy valgrind | |
- name: install pybind11 | |
run: | | |
python3 -m pip install pybind11 | |
- name: build and test | |
run: | | |
g++ --version | |
cmake --version | |
mkdir build | |
cd build | |
cmake .. -DCMAKE_BUILD_TYPE=Debug -DUSE_PYTHON=1 -DPython_EXECUTABLE=python3 -DBUILD_SHARED_LIBS=OFF | |
cmake --build . --config Debug -j2 | |
cmake --build . --config Debug --target check -j2 | |
sudo cmake --install . --config Debug | |
cd .. | |
python3 -m unittest discover -v -s tests/ | |
- name: run doctest | |
run: | | |
sudo pip3 install -U sphinx | |
cd docs | |
sphinx-build -M doctest . _build -n -E | |
- name: run tests under valgrind | |
run: PYTHONMALLOC=malloc valgrind python3 -m unittest discover -v -s tests/ | |
ubuntu2004_clang6: | |
name: "Ubuntu 20.04 with Clang 6.0" | |
runs-on: ubuntu-20.04 | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
env: | |
CC: clang-6.0 | |
CXX: clang++-6.0 | |
SKBUILD_CMAKE_ARGS: "-DCMAKE_CXX_STANDARD=11;-DEXTRA_WARNINGS=ON" | |
SKBUILD_CMAKE_TARGETS: "all;check" | |
steps: | |
- uses: actions/checkout@v4 | |
- run: sudo apt-get install clang-6.0 libz-dev python3-pip python3-numpy | |
- name: install pybind11 | |
run: | | |
sudo /usr/bin/python3 -m pip install "pybind11[global]" build | |
- name: build and test | |
run: | | |
$CXX --version | |
python3 -m build --sdist | |
python3 -m pip install -v dist/gemmi-*.tar.gz | |
python3 -m unittest discover -v -s tests/ | |
- name: run doctest | |
run: | | |
python3 -m pip install -U sphinx | |
cd docs | |
sphinx-build -M doctest . _build -n -E | |
centos: | |
runs-on: ubuntu-latest | |
name: "CentOS 7" | |
container: centos:7 | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
steps: | |
- uses: actions/checkout@v3 | |
- name: yum | |
run: | | |
yum update -y && yum install -y epel-release | |
yum install -y gcc-c++ cmake3 make git python3-devel | |
pip3 install -U numpy | |
g++ --version | |
python3 --version | |
cmake3 --version | |
type python3 | |
- name: install pybind11 | |
run: | | |
git clone --branch stable --depth=1 https://github.com/pybind/pybind11.git | |
cd pybind11 | |
cmake3 . -Wno-dev -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPYBIND11_TEST=OFF | |
make | |
make install | |
- name: build and test | |
run: | | |
pwd | |
cmake3 . -DUSE_PYTHON=1 -DPython_EXECUTABLE=/usr/bin/python3 | |
make -j2 | |
make -j2 check | |
make install | |
python3 -m unittest discover -v -s ./tests/ | |
strip --strip-unneeded ./gemmi ./gemmi.cpython*.so | |
- name: run doctest | |
run: | | |
pip3 install -U sphinx | |
cd docs | |
PYTHONPATH=.. sphinx-build -M doctest . _build -n -E | |
- uses: actions/upload-artifact@v3 | |
with: | |
name: gemmi-linux | |
path: | | |
./gemmi | |
./libgemmi_cpp.so | |
./gemmi.cpython*.so | |
retention-days: 14 |