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gemmi-validate --ccd: add check if hydrogens with the same names are #990

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Job	Run time
Ubuntu 20.04	7m 10s
macOS 11 (w/o python)	3m 49s
macOS 12	8m 32s
CentOS 7	6m 25s
Ubuntu 20.04 with Clang 6.0	6m 36s
Ubuntu 22.04	3m 58s
Windows 2022	6m 49s
	43m 19s