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WIP: small changes in sequence-alignment functions API #934

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Job	Run time
CentOS 7	3m 8s
macOS 11 (w/o python)	1m 12s
macOS 12	49s
Ubuntu 20.04	13m 13s
Ubuntu 20.04 with Clang 6.0	1m 12s
Ubuntu 22.04	7m 18s
Windows 2022	12m 16s
	39m 8s