Fix workflow test

pitagora-network · Mar 28, 2022 · 2042e9a · 2042e9a
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commit 2042e9a
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diff --git a/...-assembly/animal-genome-assembly.pack.cwl → ...ssembly/animal-genome-assembly.packed.cwl b/...-assembly/animal-genome-assembly.pack.cwl → ...ssembly/animal-genome-assembly.packed.cwl
diff --git a/...pigenome-bs-seq/epigenome-bs-seq.pack.cwl → ...genome-bs-seq/epigenome-bs-seq.packed.cwl b/...pigenome-bs-seq/epigenome-bs-seq.pack.cwl → ...genome-bs-seq/epigenome-bs-seq.packed.cwl
diff --git a/workflow/epigenome-chip-seq/yevis-config.yml b/workflow/epigenome-chip-seq/yevis-config.yml
@@ -47,6 +47,24 @@ workflow:
         - target: bowtie2_index_mm10/mm10_chr19.fa
           type: other
           url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/bowtie2_index_mm10/mm10_chr19.fa
+        - target: bowtie2_index_mm10/mm10_chr19.1.bt2
+          type: other
+          url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/bowtie2_index_mm10/mm10_chr19.1.bt2
+        - target: bowtie2_index_mm10/mm10_chr19.2.bt2
+          type: other
+          url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/bowtie2_index_mm10/mm10_chr19.2.bt2
+        - target: bowtie2_index_mm10/mm10_chr19.3.bt2
+          type: other
+          url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/bowtie2_index_mm10/mm10_chr19.3.bt2
+        - target: bowtie2_index_mm10/mm10_chr19.4.bt2
+          type: other
+          url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/bowtie2_index_mm10/mm10_chr19.4.bt2
+        - target: bowtie2_index_mm10/mm10_chr19.rev.1.bt2
+          type: other
+          url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/bowtie2_index_mm10/mm10_chr19.rev.1.bt2
+        - target: bowtie2_index_mm10/mm10_chr19.rev.2.bt2
+          type: other
+          url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/bowtie2_index_mm10/mm10_chr19.rev.2.bt2
         - target: tiny-data.bam
           type: other
           url: https://raw.githubusercontent.com/pitagora-network/DAT2-cwl/main/test/data/tiny-data.bam

diff --git a/workflow/rna-seq/rna-seq.pack.cwl → workflow/rna-seq/rna-seq.packed.cwl b/workflow/rna-seq/rna-seq.pack.cwl → workflow/rna-seq/rna-seq.packed.cwl
diff --git a/...-assembly/transcriptome-assembly.pack.cwl → ...ssembly/transcriptome-assembly.packed.cwl b/...-assembly/transcriptome-assembly.pack.cwl → ...ssembly/transcriptome-assembly.packed.cwl