model_TFN_SW_GW

Build_C_code.m

@@ -1,42 +1,48 @@
-function Build_C_code()
-
-    % This function biulds the required C MEX fucntions.
-    % NOTE, b default matlab uses -o2 optimisations.
-    % Chnaging this to -ofast reduces the doIRFconvolution.c
-    % runtime from 0.017534s to 0.010353s on a x64 Linux maxtine (in 2018) (41% faster).
-    %
-    % To change the Linux compile settings open the file ~/.matlab/R2016a/mex_C_glnxa64.xml
-    % and change:
-    %   - 'COPTIMFLAGS="-O -DNDEBUG"' to 'COPTIMFLAGS="-Ofast -DNDEBUG"'
-    %   - 'LDOPTIMFLAGS="-O"' to 'LDOPTIMFLAGS="-Ofast"'
-    %
-    % To chnage Windows Visual studio compier, open the file 
-    % mex_C_win64.xml and chnage: 
-    %  - 'OPTIMFLAGS="/Ofast /Oy- /DNDEBUG"' to 'OPTIMFLAGS="/O2 /Oy- /DNDEBUG"'
-
-    arch=computer('arch');
-    mexopts = {'-O' '-v' ['-' arch]};
-    % 64-bit platform
-    if ~isempty(strfind(computer(),'64'))
-        mexopts(end+1) = {'-largeArrayDims'};
-    end
-
-    % invoke MEX compilation tool
-    if ispc
-        mex(mexopts{:},'algorithms\models\TransferNoise\ForcingTransformation\forcingTransform_soilMoisture.c');
-        mex(mexopts{:},'algorithms\models\TransferNoise\doIRFconvolution.c');
-
-        movefile('doIRFconvolution.mexw64', 'algorithms\models\TransferNoise\doIRFconvolution.mexw64')
-        movefile('forcingTransform_soilMoisture.mexw64', 'algorithms\models\TransferNoise\ForcingTransformation\forcingTransform_soilMoisture.mexw64')
-
-    else        
-        mex(mexopts{:},'algorithms/models/TransferNoise/ForcingTransformation/forcingTransform_soilMoisture.c');
-        mex(mexopts{:},'algorithms/models/TransferNoise/doIRFconvolution.c');        
-
-        movefile('doIRFconvolution.mexa64', 'algorithms/models/TransferNoise')
-        movefile('forcingTransform_soilMoisture.mexa64', 'algorithms/models/TransferNoise/ForcingTransformation')
-    end
-
-
-end
-
+function Build_C_code()
+
+
+    addpath(genpath([pwd, filesep, 'algorithms']));
+    addpath(genpath([pwd, filesep, 'dataPreparationAnalysis']));
+    addpath(genpath([pwd, filesep, 'Examples']));
+    addpath(genpath([pwd, filesep, 'GUI']));
+
+    % This function biulds the required C MEX fucntions.
+    % NOTE, b default matlab uses -o2 optimisations.
+    % Chnaging this to -ofast reduces the doIRFconvolution.c
+    % runtime from 0.017534s to 0.010353s on a x64 Linux maxtine (in 2018) (41% faster).
+    %
+    % To change the Linux compile settings open the file ~/.matlab/R2016a/mex_C_glnxa64.xml
+    % and change:
+    %   - 'COPTIMFLAGS="-O -DNDEBUG"' to 'COPTIMFLAGS="-Ofast -DNDEBUG"'
+    %   - 'LDOPTIMFLAGS="-O"' to 'LDOPTIMFLAGS="-Ofast"'
+    %
+    % To chnage Windows Visual studio compier, open the file 
+    % mex_C_win64.xml and chnage: 
+    %  - 'OPTIMFLAGS="/Ofast /Oy- /DNDEBUG"' to 'OPTIMFLAGS="/O2 /Oy- /DNDEBUG"'
+
+    arch=computer('arch');
+    mexopts = {'-O' '-v' ['-' arch]};
+    % 64-bit platform
+    if ~isempty(strfind(computer(),'64'))
+        mexopts(end+1) = {'-largeArrayDims'};
+    end
+
+    % invoke MEX compilation tool
+    if ispc
+        mex(mexopts{:},'algorithms\models\TransferNoise\ForcingTransformation\c');
+        mex(mexopts{:},'algorithms\models\TransferNoise\doIRFconvolution.c');
+
+        movefile('doIRFconvolution.mexw64', 'algorithms\models\TransferNoise\doIRFconvolution.mexw64')
+        movefile('forcingTransform_soilMoisture.mexw64', 'algorithms\models\TransferNoise\ForcingTransformation\forcingTransform_soilMoisture.mexw64')
+
+    else        
+        mex(mexopts{:},'algorithms/models/TransferNoise/ForcingTransformation/forcingTransform_soilMoisture.c');
+        mex(mexopts{:},'algorithms/models/TransferNoise/doIRFconvolution.c');        
+
+        movefile('doIRFconvolution.mexa64', 'algorithms/models/TransferNoise')
+        movefile('forcingTransform_soilMoisture.mexa64', 'algorithms/models/TransferNoise/ForcingTransformation')
+    end
+
+
+end
+

GUI/export_fig/LICENSE

@@ -1,27 +1,27 @@
-Copyright (c) 2014, Oliver J. Woodford, Yair M. Altman
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-* Redistributions of source code must retain the above copyright notice, this
-  list of conditions and the following disclaimer.
-
-* Redistributions in binary form must reproduce the above copyright notice,
-  this list of conditions and the following disclaimer in the documentation
-  and/or other materials provided with the distribution.
-
-* Neither the name of the {organization} nor the names of its
-  contributors may be used to endorse or promote products derived from
-  this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+Copyright (c) 2014, Oliver J. Woodford, Yair M. Altman
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of the {organization} nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.