Mazurowski Lab

All

28 repositories

SegmentAnyBone
Public
SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI
deep-learning medical-imaging segmentation bone-segmentation segment-anything-model
Python
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Other
•16•66•7•0•Updated Dec 23, 2024Dec 23, 2024
SAM-TexturalConfusion-Metrics
Public
Metrics for object tree-likeness and textural contrast for semantic segmentation.
segment-anything
Python
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Apache License 2.0
•0•3•0•0•Updated Dec 9, 2024Dec 9, 2024
SlicerSegmentHumanBody
Public
3D Slicer extension for SegmentAnyBone developed by Mazurowski Lab
segmentation 3d-slicer 3d-slicer-extension medical-image-segmentation segment-anything-model
Python
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Other
•3•2•0•0•Updated Dec 9, 2024Dec 9, 2024
RaD
Public
RaD: a metric for comparing medical image distributions.
computer-vision medical-imaging medical-image-analysis fid
Python
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Apache License 2.0
•0•2•0•0•Updated Dec 3, 2024Dec 3, 2024
segmentation-guided-diffusion
Public
[MICCAI 2024] Easy diffusion models (optionally with segmentation guidance) for medical images and beyond.
diffusion-models ddpm semantic-synthesis diffusers conditional-diffusion miccai2024
Python
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Other
•6•118•4•0•Updated Dec 2, 2024Dec 2, 2024
finetune-SAM
Public
This is an official repo for fine-tuning SAM to customized medical images.
sam medical-imaging finetune foundation-models
Python
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Apache License 2.0
•23•152•7•0•Updated Oct 18, 2024Oct 18, 2024
SlicerSegmentWithSAM
Public
3D Slicer extension for Segment Anything Model (SAM) developed by Meta
segmentation 3d-slicer 3d-slicer-extension medical-image-segmentation segment-anything-model
Python
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Apache License 2.0
•6•47•6•0•Updated Sep 23, 2024Sep 23, 2024
intrinsic-properties
Public
[ICLR 2024] Easy tools for measuring the label sharpness and intrinsic dimension of datasets and learned representations, which relate to model generalization and robustness.
pytorch generalization medical-image-analysis intrinsic-dimension label-sharpness
Python
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Apache License 2.0
•2•16•0•0•Updated Sep 6, 2024Sep 6, 2024
segment-anything2-medical-evaluation
Public
Python
•2•7•1•0•Updated Aug 26, 2024Aug 26, 2024
MRI-parameter-prediction
Public
(MIDL 2023) Code for "Reverse Engineering Breast MRIs: Predicting Acquisition Parameters Directly from Images"
deep-learning pytorch mri classification breast-cancer medical-image-analysis cancer-classification breast-mri
Python
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Apache License 2.0
•0•6•0•0•Updated Jun 27, 2024Jun 27, 2024
radiologyintrinsicmanifolds
Public
(MICCAI 2022) Code for "The Intrinsic Manifolds of Radiological Images and their Role in Deep Learning" (intrinsic dimensions)
deep-learning radiology medical-image-processing medical-image-analysis intrinsic-dimension
Jupyter Notebook
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Apache License 2.0
•0•6•0•0•Updated Jun 27, 2024Jun 27, 2024
ContourDiff
Public
Contour-Guided Diffusion Models for Unpaired Image-to-Image Translation
Python
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Apache License 2.0
•2•21•0•0•Updated Jun 15, 2024Jun 15, 2024
segment-anything-medical-evaluation
Public
Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis
medical-imaging segmentation medical-image-analysis segment-anything segment-anything-model
Python
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Apache License 2.0
•18•149•0•0•Updated Jun 13, 2024Jun 13, 2024
picard-anomalydetection
Public
Pluralistic Image Completion for Anomaly Detection (Med. Image Anal. 2023)
breast-cancer-prediction inpainting anomaly-detection image-completion medical-image-analysis
Python
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Apache License 2.0
•1•7•0•0•Updated Jun 13, 2024Jun 13, 2024
SlicerExtensionsIndex
Public
Slicer extensions index
Python
•245•0•0•0•Updated May 9, 2024May 9, 2024
single-image-test-time-adaptation
Public
Single-image test-time domain adaptation for segmentation models.
segmentation domain-adaptation test-time-adaptation
Python
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Apache License 2.0
•0•10•0•0•Updated Apr 16, 2024Apr 16, 2024
3D-Breast-FGT-and-Blood-Vessel-Segmentation
Public
Python
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Other
•9•23•0•0•Updated Apr 2, 2024Apr 2, 2024
swssl-for-anomaly-detection
Public
SWSSL - Sliding window-based self-supervised learning for anomaly detection in high-resolution images (IEEE Trans. on Medical Imaging 2023)
breast-cancer-classification anomaly-detection
Python
•1•6•0•0•Updated Mar 12, 2024Mar 12, 2024
ExtensionsIndexStable
Public
Slicer extensions index
Python
•245•0•0•0•Updated Jan 31, 2024Jan 31, 2024
DBTex-baseline
Public
This is a baseline neural network model for breast tumor detection on the BCS-DBT dataset, to accompany the DBTex challenge.
Python
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Apache License 2.0
•0•3•0•0•Updated Jan 22, 2024Jan 22, 2024
DBT-cancer-detection-algorithms
Public
Library of lesion detection algorithm codebases from the DBTex Digital Breast Tomosynthesis Lesion Detection Challenge
competition library tumor-detection digital-breast-tomosynthesis machine-learning deep-learning
2•4•0•0•Updated Jan 22, 2024Jan 22, 2024
MRI-deeplearning-tutorial
Public
Source code for my blog post tutorial about how to use deep learning on MR images.
classification cancer-detection breast-mri tutorial deep-learning neural-network pytorch convolutional-neural-networks
Jupyter Notebook
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MIT License
•3•14•1•0•Updated Jan 12, 2024Jan 12, 2024
ExtensionsIndex
Public
Slicer extensions index
Python
•245•0•0•0•Updated Nov 13, 2023Nov 13, 2023
Supermask
Public
Jupyter Notebook
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Apache License 2.0
•0•1•0•0•Updated Sep 9, 2023Sep 9, 2023
knee_clf
Public
Python
•0•0•0•0•Updated May 19, 2023May 19, 2023
breastMRI_styletransfer
Public
Code for our paper "Deep Learning for Breast MRI Style Transfer with Limited Training Data".
style-transfer image-translation domain-adaptation breast-mri deep-learning
Python
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MIT License
•0•3•0•0•Updated Jan 18, 2023Jan 18, 2023
osteoarthritis-classification
Public
this is a implementation for knee KL score prediction.
Python
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Other
•2•12•0•0•Updated Mar 24, 2022Mar 24, 2022
duke-dbt-data
Public
Jupyter Notebook
•16•34•4•0•Updated Jan 4, 2021Jan 4, 2021