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    21 repositories

    • CTD

      Public
      CTD method for “connecting the dots” in weighted graphs
      Jupyter Notebook
      •
      Other
      •7•6•3•1•Updated Dec 17, 2024Dec 17, 2024

    • ERCC-DCC

      Public
      0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • XDec_SM

      Public
      Code related to the XDec_SM manuscript.
      0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • exRnaDataSlicer

      Public
      This program will provide coverage from given region of interst bed file and the the selected exRNA Atlas biosamples
      Ruby
      •
      MIT License
      •0•1•0•0•Updated May 12, 2023May 12, 2023

    • exRBP

      Public
      Code and description for exRBP fingerprinting analysis presented in Cell Genomics 2023 (DOI pending)
      R
      •0•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • ASPRE-analysis

      Public
      HTML
      •0•0•0•0•Updated Nov 29, 2022Nov 29, 2022

    • Allelic_variant_call_pipeline

      Public
      Pipeline for allele-specific variant calling from RNAseq
      R
      •0•1•0•0•Updated Oct 18, 2022Oct 18, 2022

    • variantNamingPipeline

      Public
      Ruby
      •
      MIT License
      •1•1•0•1•Updated Aug 31, 2022Aug 31, 2022

    • CTDext

      Public
      Extended functionalities to supplement the CTD R package.
      R
      •
      Other
      •0•0•1•0•Updated May 5, 2022May 5, 2022

    • XDec_CHI

      Public
      Contains deconvolution extensions for sliding window deconvolution and cell type specific correlations
      R
      •0•0•0•0•Updated Nov 28, 2021Nov 28, 2021

    • PDAC_decon

      Public
      Scripts used for deconvolution of PDAC samples
      R
      •0•0•0•0•Updated Mar 4, 2020Mar 4, 2020

    • XDec

      Public
      XDec (Expression Deconvolution) is a deconvolution tool for RNA-seq expression data. Starting with complex gene expression profiles of bulk tissue or biofluid samples, can estimate constituent cell type or cargo type composition of each input sample as well as gene transcription profiles of constituent cell/cargo types.
      R
      •
      MIT License
      •3•2•1•0•Updated Aug 13, 2019Aug 13, 2019

    • Allele-Registry

      Public
      This repository contains the source code for the ClinGen Allele Registry. The Allele Registry provides unique identifiers for alleles. It can be accessed at https://reg.genome.network/.
      C++
      •
      GNU Affero General Public License v3.0
      •0•4•5•0•Updated Aug 5, 2019Aug 5, 2019

    • allelic_epigenome

      Public
      Perl
      •
      MIT License
      •3•4•1•0•Updated Dec 20, 2018Dec 20, 2018

    • genboree

      Public
      Stand-alone Genboree server with core services. The installation package includes GenboreeKB and all dependencies.
      JavaScript
      •
      Other
      •2•1•0•1•Updated Mar 26, 2018Mar 26, 2018

    • pathogenicity_calculator

      Public
      ClinGen Pathogenicity Calculator
      JavaScript
      •
      Other
      •1•6•0•0•Updated Mar 26, 2018Mar 26, 2018

    • actionability

      Public
      ClinGen Actionability Curation Interface
      Other
      •1•0•0•0•Updated Mar 16, 2018Mar 16, 2018

    • pash

      Public
      Positional Hashing Method for Sequence Comparison
      C++
      •
      Other
      •0•1•0•0•Updated Dec 28, 2016Dec 28, 2016

    • exrna_atlas

      Public
      ExRNA Atlas - portal for browsing and managing exRNA samples
      JavaScript
      •
      Other
      •1•0•0•0•Updated Oct 29, 2016Oct 29, 2016

    • EDec

      Public
      EDec (Epigenomic Deconvolution) is a technique that, starting from methylation and gene expression profiles of bulk tissue samples, infers cell type composition of each input sample as well as DNA methylation and gene transcription profiles of constituent cell types.
      R
      •
      Other
      •7•7•0•0•Updated Oct 12, 2016Oct 12, 2016

    • EDecExampleData

      Public
      This repository contains an R data package with an example dataset used to illustrate the use of the EDec method.
      R
      •0•0•1•0•Updated Sep 27, 2016Sep 27, 2016