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give netmhcbundle its own dir outside the mhctools repo
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iskandr committed Mar 13, 2024
1 parent 77e22b8 commit 5a5908e
Showing 1 changed file with 5 additions and 6 deletions.
11 changes: 5 additions & 6 deletions .github/workflows/tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -25,19 +25,18 @@ jobs:
with:
python-version: ${{ matrix.python-version }}
cache: "pip"

- name: Checkout private netmhc-bundle repo
uses: actions/checkout@v4
with:
repository: openvax/netmhc-bundle
token: ${{ secrets.NETMHC_BUNDLE_ACCESS_TOKEN }}
path: netmhc-bundle
path: $HOME/netmhc-bundle
- name: Configure netmhc-bundle paths
run: |
ls -l .
ls -l netmhc-bundle
export NETMHC_BUNDLE_HOME=$PWD/netmhc-bundle
mkdir tmp
export NETMHC_BUNDLE_TMPDIR=$PWD/tmp
export NETMHC_BUNDLE_HOME=$$HOME/netmhc-bundle
mkdir $HOME/tmp
export NETMHC_BUNDLE_TMPDIR=$HOME/tmp
export PATH=$PATH:$NETMHC_BUNDLE_HOME/bin
# make sure netmhc-bundle tools are actually installed
echo `which netMHC` && echo `which netMHCpan` && echo `which netMHCcons`
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