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bump devops tests to include checks for notebook badges #1453

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merged 36 commits into from
Dec 18, 2024
Merged

bump devops tests to include checks for notebook badges #1453

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b08bea3
bump devops tests
slayoo Dec 5, 2024
023621d
fix Binder badge in notebooks
AgnieszkaZaba Dec 5, 2024
7bef5ed
fix notebooks badges and structure
AgnieszkaZaba Dec 5, 2024
bc93f55
run colab import in notebooks
AgnieszkaZaba Dec 6, 2024
569ab4b
update badges in notebooks
AgnieszkaZaba Dec 6, 2024
ac2d7aa
more badges fixing
AgnieszkaZaba Dec 6, 2024
afe628c
white-spaces cleanup
AgnieszkaZaba Dec 6, 2024
1d6c5ad
white-spaces cleanup
AgnieszkaZaba Dec 6, 2024
20e033b
rerun notebooks
AgnieszkaZaba Dec 6, 2024
f6afc80
more cleanup and reruns
AgnieszkaZaba Dec 6, 2024
bc7c2c2
fixing notebooks
AgnieszkaZaba Dec 8, 2024
8d28db4
rerun notebooks
AgnieszkaZaba Dec 9, 2024
178a828
rerun notebooks and clear numba warnings
AgnieszkaZaba Dec 10, 2024
fdbb9d0
rerun notebooks and clear numba warnings
AgnieszkaZaba Dec 10, 2024
c281153
change Srivastava_setup ipynb to py
AgnieszkaZaba Dec 13, 2024
7468b0a
update notebooks
AgnieszkaZaba Dec 14, 2024
5c39180
file formatting using black
AgnieszkaZaba Dec 14, 2024
bbafca0
Merge branch 'main' into issue_1449
slayoo Dec 14, 2024
59ac9dc
address pylint comments
slayoo Dec 14, 2024
4a090ad
one more pylint comment
slayoo Dec 14, 2024
bd6d590
run colab import in notebooks
AgnieszkaZaba Dec 6, 2024
51a4803
fix badges
AgnieszkaZaba Dec 15, 2024
287f4b1
fix badge in Bolin58
AgnieszkaZaba Dec 15, 2024
c4c0ac4
move pylint disable
slayoo Dec 15, 2024
ead9976
fix output in fig_A2.ipynb
AgnieszkaZaba Dec 15, 2024
25f15fc
rerun long notebooks
AgnieszkaZaba Dec 15, 2024
4e32901
change name to test.yml in link
AgnieszkaZaba Dec 15, 2024
0b1eb06
yet another notebooks rerun
AgnieszkaZaba Dec 15, 2024
2a5c069
clear warnings in paraview
AgnieszkaZaba Dec 16, 2024
f1bc437
fix json structure
AgnieszkaZaba Dec 16, 2024
1b3e10a
rerun paraview_hello_world.ipynb
AgnieszkaZaba Dec 16, 2024
be7e32c
fix error in figs_3_4_5.ipynb
AgnieszkaZaba Dec 16, 2024
2fcd31d
add main function to performance_comparison
AgnieszkaZaba Dec 17, 2024
bc174ac
Merge branch 'main' into issue_1449
AgnieszkaZaba Dec 17, 2024
2fb371e
Merge branch 'main' into issue_1449
AgnieszkaZaba Dec 17, 2024
b89b11b
disable plotting on CI
AgnieszkaZaba Dec 18, 2024
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17 changes: 11 additions & 6 deletions examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb
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Expand Up @@ -6,8 +6,8 @@
"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb)"
]
},
{
Expand All @@ -23,18 +23,23 @@
]
},
{
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2024-12-06T10:37:52.672366Z",
"start_time": "2024-12-06T10:37:52.668120Z"
}
},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": [
"import sys\n",
"if 'google.colab' in sys.modules:\n",
" !pip --quiet install open-atmos-jupyter-utils\n",
" from open_atmos_jupyter_utils import pip_install_on_colab\n",
" pip_install_on_colab('PySDM-examples')"
],
"id": "aa876f2db21bb522"
"id": "aa876f2db21bb522",
"outputs": [],
"execution_count": 1
},
{
"cell_type": "code",
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17 changes: 11 additions & 6 deletions examples/PySDM_examples/Abdul_Razzak_Ghan_2000/fig_4_kinetic_limitations.ipynb
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"cell_type": "markdown",
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/fig_4_kinetic_limitations.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/fig_4_kinetic_limitations.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/fig_4_kinetic_limitations.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/fig_4_kinetic_limitations.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/fig_4_kinetic_limitations.ipynb)"
],
"metadata": {
"collapsed": false
Expand All @@ -25,18 +25,23 @@
]
},
{
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2024-12-06T10:38:02.660871Z",
"start_time": "2024-12-06T10:38:02.649799Z"
}
},
"cell_type": "code",
"outputs": [],
"execution_count": null,
"source": [
"import sys\n",
"if 'google.colab' in sys.modules:\n",
" !pip --quiet install open-atmos-jupyter-utils\n",
" from open_atmos_jupyter_utils import pip_install_on_colab\n",
" pip_install_on_colab('PySDM-examples')"
],
"id": "f52cbd092d056ba6"
"id": "f52cbd092d056ba6",
"outputs": [],
"execution_count": 1
},
{
"cell_type": "code",
Expand Down
4 changes: 2 additions & 2 deletions examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb
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"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/figs1-5.ipynb)"
]
},
{
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4 changes: 2 additions & 2 deletions examples/PySDM_examples/Alpert_and_Knopf_2016/fig_1.ipynb
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"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_1.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_1.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_1.ipynb)\n"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_1.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_1.ipynb)"
]
},
{
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4 changes: 2 additions & 2 deletions examples/PySDM_examples/Alpert_and_Knopf_2016/fig_2.ipynb
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Expand Up @@ -10,8 +10,8 @@
},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_2.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_2.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_2.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_2.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_2.ipynb)"
]
},
{
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4 changes: 2 additions & 2 deletions examples/PySDM_examples/Alpert_and_Knopf_2016/fig_3.ipynb
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"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_3.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_3.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_3.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_3.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_3.ipynb)"
]
},
{
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4 changes: 2 additions & 2 deletions examples/PySDM_examples/Alpert_and_Knopf_2016/fig_4.ipynb
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"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_4.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_4.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_4.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_4.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_4.ipynb)"
]
},
{
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4 changes: 2 additions & 2 deletions examples/PySDM_examples/Alpert_and_Knopf_2016/fig_5.ipynb
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"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_5.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_5.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_5.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_5.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Alpert_and_Knopf_2016/fig_5.ipynb)"
]
},
{
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6 changes: 3 additions & 3 deletions examples/PySDM_examples/Arabas_and_Shima_2017/fig_5.ipynb
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Expand Up @@ -4,9 +4,9 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Arabas_and_Shima_2017/fig_5.ipynb) \n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Arabas_and_Shima_2017/fig_5.ipynb) \n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Arabas_and_Shima_2017/fig_5.ipynb)"
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Arabas_and_Shima_2017/fig_5.ipynb)\n",
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Arabas_and_Shima_2017/fig_5.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Arabas_and_Shima_2017/fig_5.ipynb)"
]
},
{
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4 changes: 2 additions & 2 deletions examples/PySDM_examples/Arabas_et_al_2015/gui.ipynb
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"metadata": {},
"source": [
"[![preview notebook](https://img.shields.io/static/v1?label=render%20on&logo=github&color=87ce3e&message=GitHub)](https://github.com/open-atmos/PySDM/blob/main/examples/PySDM_examples/Arabas_et_al_2015/gui.ipynb)\n",
"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Arabas_et_al_2015/gui.ipynb)\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Arabas_et_al_2015/gui.ipynb)"
"[![launch on mybinder.org](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/open-atmos/PySDM.git/main?urlpath=lab/tree/examples/PySDM_examples/Arabas_et_al_2015/gui.ipynb)\n",
"[![launch on Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/open-atmos/PySDM/blob/main/examples/PySDM_examples/Arabas_et_al_2015/gui.ipynb)"
]
},
{
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